Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A04
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)                   30   2.2  
SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)            30   2.9  
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     28   8.8  

>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
          Length = 325

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 435 TEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 560
           T+ +    N V V   P+      PL +P  A TP+ RP  T
Sbjct: 98  TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDT 139


>SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 508 HCRYPNKPALLSLDRNRRAKRQKQWSK 588
           H RYPNK +LL  +   R+  Q QW+K
Sbjct: 232 HPRYPNKRSLLQFESPPRSGCQIQWAK 258


>SB_15617| Best HMM Match : Glycoprotein_G (HMM E-Value=4.8)
          Length = 554

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
 Frame = +1

Query: 514 RYPNKP--ALLSLDRNRR--AKRQKQWSKGRDKICKGTLIFSD--EFEKNSLKDLTSWGA 675
           R P +P  A+ S D N R   K +KQW  GRD +    +  SD   FE  +  +   W A
Sbjct: 437 RRPREPGQAIPSADGNTRNFKKFKKQWYPGRDSVLPRLIGGSDLAVFESQTGVEQELWFA 496

Query: 676 EVRFPEXPDYP---FNVYTTDGTIGF 744
           E R  +   YP   F+ +   G  G+
Sbjct: 497 EAR-EQHVSYPLAEFSFFVFAGLTGW 521


>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 565 WHVCSGLTIGVLACWGICSGPVVDVAT----GGLATSTG 461
           W+V +  T GV  CWG C    + ++     GGL  S+G
Sbjct: 312 WYVGAKTTSGVPQCWGYCQASSMKISLLSDYGGLKRSSG 350


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 447  NENGNPVDVANPPVATSTTGPLQIP 521
            N  GN      PPV T TT P   P
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +2

Query: 494 IYHGSTAD--TPTSQHSYR*TGTDVPNVRNSGPRAAIKSVREL*SSVTSLKRIALKI*RV 667
           +YH + AD    +S+ S   + T + NV  +GP+ A+K   +   SV   +++  K+   
Sbjct: 586 MYHEAFADKENASSRQSLEESVTQLSNVCANGPKEAVKEAHDKLVSVIESQKLLEKMDAF 645

Query: 668 GELKLDFLKXRIIHSMSTQLM 730
            + K  +L  +++      +M
Sbjct: 646 DKDKEKYLLFKVVRQYMGMVM 666


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,740,601
Number of Sequences: 59808
Number of extensions: 531250
Number of successful extensions: 1224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)