Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A04
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm rec... 31 0.83
AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical ... 30 2.5
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 30 2.5
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 29 3.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 28 7.8
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 28 7.8
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 7.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 7.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 7.8
>AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm
receptor protein 63 protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 613 TLIFSDEFEKNSLKDLTSWGAEVRFPEXPDYPFNVYTTDGTIGFDSGSLIISPVLLES 786
TLI D+ ++L+ L ++ E P Y Y DG++ + + L++ V L S
Sbjct: 150 TLIAKDKMLDDNLRKLIFENYQLLISELPKYNITPYNLDGSVNWGNFGLLVIAVFLNS 207
>AL117205-4|CAB55162.1| 441|Caenorhabditis elegans Hypothetical
protein Y116A8A.4 protein.
Length = 441
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = +3
Query: 306 AKNGVWTFRDRNAQLKLGDKIYFWTYVIXDGLGYR------XDNGEWTVTEFVNENGNPV 467
A NGV D KLGD ++F+ Y D L ++ D G T T + E G P+
Sbjct: 181 AFNGVPCLADETTSSKLGDVVHFYGYSDYDLLHHKLLIKAVKDGGICTETYYTEEVGGPL 240
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 396 GLGYRXDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQ 557
G G R N E + V E NP N P AT +GP+ P + P+ +Q
Sbjct: 695 GEGKRQMNEEARLQHEVAEKANPPSFFNAPAATRGSGPMP-PLNGTAPLPSGQQ 747
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 417 NGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPI 542
N EWTV EF ++ GN D N + + P + + +TP+
Sbjct: 47 NWEWTVNEFWDQTGNVADNLNGTITWLRSNPAGL--KLNTPV 86
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 399 LGYRXDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 560
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2174 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2225
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 399 LGYRXDNGEWTVTEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQT 560
LG R G+ ++ +N G V P +T + PL P +STP RP T
Sbjct: 2247 LGIRNSYGDNSIDAIIN--GGSRSVGFYPRSTFASNPLTPPLGSSTPTHRPHVT 2298
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 444 VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 551
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2289 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2324
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 444 VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 551
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 444 VNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRP 551
VNE+G+P+DV P+ + G P++++ +P
Sbjct: 2352 VNEDGDPIDVNGKPLEKNEDGKFVKPKESTQETPQP 2387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,893
Number of Sequences: 27780
Number of extensions: 385209
Number of successful extensions: 1032
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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