Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A04
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.17 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.17 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 480 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSE 575
           PPV    +G + + Q  ST +V   Q C T E
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPE 268


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 480 PPVATSTTGPLQIPQQASTPIVRPEQTCQTSE 575
           PPV    +G + + Q  ST +V   Q C T E
Sbjct: 237 PPVILENSGVVHVAQDESTSLVCVAQACPTPE 268


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 362 ISQF*LSISVSERPNAVFGFSDVPG 288
           ++ F L+I V     A FGF+  PG
Sbjct: 53  LADFGLAIEVQGEAQAWFGFAGTPG 77


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 628 DEFEKNSLKDLTSWGAEVRFPEXPDYPFNVYTTDGTIGFDSGSLIISPVLLESNSV 795
           +EFE+N L+ L S+  +V F     YP N            G   ++ + +ESN++
Sbjct: 289 EEFERNRLQLLESFKRKVNF-----YPNNQDIEKFLNYLKRGGKTLTSISVESNTM 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,623
Number of Sequences: 438
Number of extensions: 4816
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)