Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_A03
         (861 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    49   2e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    44   0.004
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.43 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.00 

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 48.8 bits (111), Expect = 2e-04
 Identities = 28/51 (54%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 711 CINESAXARGEAVXVLGALPXPRSLTRCARSFGCGERYXL-XXRR*YGYPQ 860
           CI + A AR EAV VL ALP  RS TRC RS GCG         R YG PQ
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQ 316


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 44.4 bits (100), Expect = 0.004
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +3

Query: 759 GALPXPRSLTRCARSFGCGERYXL 830
           G +P PRSLTR ARSFGCGERY L
Sbjct: 34  GDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.5 bits (83), Expect = 0.43
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = -3

Query: 763 APNTQTASPRAXADSLMQ 710
           APNTQTASPRA ADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 36.3 bits (80), Expect = 1.00
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 709 SALMNRPXRGERRFXYW 759
           +ALMNRP RGERRF YW
Sbjct: 25  AALMNRPTRGERRFAYW 41


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 480,758,506
Number of Sequences: 1657284
Number of extensions: 5715597
Number of successful extensions: 7335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7333
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)