Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_A02
(868 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 65 7e-11
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 65 7e-11
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 40 0.002
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 38 0.007
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 38 0.009
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 37 0.020
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 36 0.035
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 35 0.061
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 35 0.061
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 35 0.061
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 35 0.061
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 35 0.081
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 35 0.081
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 35 0.081
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 34 0.11
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 34 0.11
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 33 0.19
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 33 0.19
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 33 0.19
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 33 0.19
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 33 0.25
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 33 0.25
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 33 0.25
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 33 0.33
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 32 0.43
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 32 0.57
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 32 0.57
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 32 0.57
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 31 0.75
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 31 0.75
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 31 0.75
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 0.75
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 0.75
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 31 0.75
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 31 0.75
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 31 1.00
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 1.00
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 1.3
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 31 1.3
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 31 1.3
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 31 1.3
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 30 1.7
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 30 1.7
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 30 1.7
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 30 1.7
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 30 1.7
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 30 1.7
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 30 2.3
At2g09900.1 68415.m01028 hypothetical protein 30 2.3
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 30 2.3
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 3.0
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 29 3.0
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 29 4.0
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 29 4.0
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 29 4.0
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 5.3
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 29 5.3
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 28 7.0
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 28 7.0
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 28 9.3
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 28 9.3
At2g02470.1 68415.m00186 PHD finger family protein contains Pfam... 28 9.3
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 28 9.3
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 64.9 bits (151), Expect = 7e-11
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +2
Query: 155 SAXLQVXFITK-QAQYAVPDSPYAIQCNVXPADLNTLINAILKXPSPSFEKAVIFDFLVC 331
S L V F+TK + + VP + AI NV L++++N+I++ +P + K FDFL+
Sbjct: 9 SRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEW-KTEPFDFLID 67
Query: 332 GXLLCASLAEHLQEKGVSTEDTLEVEYL 415
G L+ SL E L KG+S E TLE+EY+
Sbjct: 68 GELIRMSLEEFLLAKGISAERTLEIEYI 95
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 453 MHDDWVSAVQAHSS-WILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKAVSWVS 608
+HDDWVSAV S +IL+G YD +WS+ G + GH+ + +V+ V+
Sbjct: 108 LHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVN 160
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 456 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTK 545
H W+SA + H SSW +LS SYD + +W +
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLR 389
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 64.9 bits (151), Expect = 7e-11
Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Frame = +2
Query: 155 SAXLQVXFITK-QAQYAVPDSPYAIQCNVXPADLNTLINAILKXPSPSFEKAVIFDFLVC 331
S L V F+TK + + VP + AI NV L++++N+I++ +P + K FDFL+
Sbjct: 9 SRRLHVKFVTKLDSPFKVPVNSVAIPSNVTRLGLSSIVNSIIESENPEW-KTEPFDFLID 67
Query: 332 GXLLCASLAEHLQEKGVSTEDTLEVEYL 415
G L+ SL E L KG+S E TLE+EY+
Sbjct: 68 GELIRMSLEEFLLAKGISAERTLEIEYI 95
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 453 MHDDWVSAVQAHSS-WILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKAVSWVS 608
+HDDWVSAV S +IL+G YD +WS+ G + GH+ + +V+ V+
Sbjct: 108 LHDDWVSAVNGSSPRFILTGCYDGLGRVWSSAGSCSHILEGHSGAISSVALVN 160
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 456 HDDWVSAVQAH-SSW--ILSGSYDNSLHIWSTKGQHKLA-IPGHTSPVKAVSW 602
H W+SA + H SSW +LS SYD + +W + L+ I H V + W
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADW 409
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 414 WKGSLXPTPQDCLM-HDDWVSAV--QAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTS 581
W+ S+ P+ L H V+ V WI S S+D S+ +W+ GQ GH
Sbjct: 344 WEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVG 403
Query: 582 PVKAVSW 602
PV VSW
Sbjct: 404 PVYQVSW 410
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 483 AHSSWILSGSYDNSLHIWSTKGQH-KLAIPGHTSPVKAVSW 602
A S +LSGS D++L IW + + K +PGH V AV W
Sbjct: 412 ADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDW 452
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 691 PVD-CMITYRGHDXGXECLSVSADGNRFASGSWD 789
PV+ C T GH C+S S DG + ASGS D
Sbjct: 97 PVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGD 130
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 634 VSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDK 792
VSGS D T LW +V + P + GH + S DG AS S+DK
Sbjct: 333 VSGSDDFTMFLWEPSVSKQPKKRL---TGHQQLVNHVYFSPDGKWIASASFDK 382
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 492 SWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKAVSW 602
S + SGS DN++HIW+ + G + GH S VK V+W
Sbjct: 131 SMLASGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTW 168
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = +3
Query: 471 SAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW------VSFQXRSSY 629
S + ++ +GS D S+H+WS +KG + TSP+ SW ++ ++ Y
Sbjct: 451 SCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPILCCSWSGIGKPLASADKNGY 510
Query: 630 IC*W 641
+C W
Sbjct: 511 VCTW 514
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 489 SSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVSW 602
SS+I SGS D+ ++IW+ K L + GH+ V VSW
Sbjct: 455 SSFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSW 493
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 35.9 bits (79), Expect = 0.035
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 489 SSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
S+ I+SGS+D ++ IW T G+ +P H+ PV AV +
Sbjct: 125 SNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDF 163
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVS 599
I+SGS DN +H+W + L + GHT V V+
Sbjct: 258 IVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVA 292
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 456 HDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQH--KLAIPGHTSPVKAVSWVSFQXRS 623
H D V+AV + S I+S SYD IW + H K I P VS+V F
Sbjct: 154 HSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPP---VSFVRFSPNG 210
Query: 624 SYI 632
+I
Sbjct: 211 KFI 213
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 631 FVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
F+SGS D TA LW V T+ GH+ + DG RF +GS D
Sbjct: 220 FISGSCDSTARLWDTRAASRAVR---TFHGHEGDVNTVKFFPDGYRFGTGSDD 269
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 468 VSAVQAHSSWILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVKAVSW 602
VS ++ +W +SGS D++ +W T+ + GH V V +
Sbjct: 210 VSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKF 256
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 631 FVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
F+SGS D TA LW V T+ GH+ + DG RF +GS D
Sbjct: 158 FISGSCDSTARLWDTRAASRAVR---TFHGHEGDVNTVKFFPDGYRFGTGSDD 207
Score = 34.7 bits (76), Expect = 0.081
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 610 SXGDQATFVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
S + F + + T +W + +D + H CL +SADG+ +GSWD
Sbjct: 241 SVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWD 300
Query: 790 ---KMFVFG 807
K++ FG
Sbjct: 301 SNLKIWAFG 309
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 468 VSAVQAHSSWILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVKAVSW 602
VS ++ +W +SGS D++ +W T+ + GH V V +
Sbjct: 148 VSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKF 194
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 631 FVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
F+SGS D TA LW V T+ GH+ + DG RF +GS D
Sbjct: 220 FISGSCDSTARLWDTRAASRAVR---TFHGHEGDVNTVKFFPDGYRFGTGSDD 269
Score = 34.7 bits (76), Expect = 0.081
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 610 SXGDQATFVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
S + F + + T +W + +D + H CL +SADG+ +GSWD
Sbjct: 303 SVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQDSHRNRISCLGLSADGSALCTGSWD 362
Query: 790 ---KMFVFG 807
K++ FG
Sbjct: 363 SNLKIWAFG 371
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 468 VSAVQAHSSWILSGSYDNSLHIWSTKGQHKL--AIPGHTSPVKAVSW 602
VS ++ +W +SGS D++ +W T+ + GH V V +
Sbjct: 210 VSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKF 256
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.1 bits (77), Expect = 0.061
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +1
Query: 565 YQVIHHQ*KQYHGFPSXGDQATFVSGSH-----DQTAILWVWNVPRNPVDCMITYRGHDX 729
Y +IH +Y G S + S SH L +W+ R+P +C+ RGH
Sbjct: 75 YSLIH----RYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDA-RSPYECLKVLRGHTN 129
Query: 730 GXECLSVSADGNRFASGSWDK 792
C++ + N SGS+D+
Sbjct: 130 FVFCVNFNPPSNLIVSGSFDE 150
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +3
Query: 435 TPQDCLM----HDDWVSAVQAH--SSWILSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKA 593
+P +CL H ++V V + S+ I+SGS+D ++ IW K G+ I H+ P+ +
Sbjct: 116 SPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISS 175
Query: 594 V 596
V
Sbjct: 176 V 176
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 676 NVP-RNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKMFV 801
NVP P + T GH C+ S DGN AS S DK +
Sbjct: 26 NVPIYKPYRHLKTLEGHTAAISCVKFSNDGNLLASASVDKTMI 68
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 486 HSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVS 599
+ +I+SGS DN +++W + ++ L + GHT V +VS
Sbjct: 269 NGKYIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVS 307
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 492 SWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
++I SGS D+ ++IW + G+ + +PGH V VSW
Sbjct: 502 AFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSW 539
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 34.7 bits (76), Expect = 0.081
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 631 FVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKM 795
F SGS D L +W++ + C+ TY+GH G L + DG SG D +
Sbjct: 209 FASGSLDTN--LKIWDIRKK--GCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNV 259
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 34.7 bits (76), Expect = 0.081
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIW-----STKGQHKLAI-PGHTSPVK--AVSWVSF 611
H + + S +LSGS D SL +W +G LA+ GHT PVK AVS
Sbjct: 327 HRKAIMCLAVASDLVLSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSVSDS 386
Query: 612 QXRSSYIC 635
S Y C
Sbjct: 387 DSNSDYSC 394
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 631 FVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKM 795
F SGS D L +W++ + C+ TY+GH G L + DG SG D +
Sbjct: 116 FASGSLDTN--LKIWDIRKK--GCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNI 166
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 631 FVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKM 795
F SGS D L +W++ + C+ TY+GH G L + DG SG D +
Sbjct: 116 FASGSLDTN--LKIWDIRKK--GCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNI 166
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTKGQHK-LAIPGHTSPVKAVSWVSFQ 614
+ SG DN L +W+ Q L + HT+ VKA++W Q
Sbjct: 313 LASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQ 352
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 414 WKGSLXPTPQDCLMHDDWVSAVQAHSSW-ILSGSYDNSLHIWSTKGQHKLAIPGHTSPVK 590
WKG + Q H D V + LS S+D S+ +W+ G+ L + GHTS V
Sbjct: 177 WKGKT--SLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVY 234
Query: 591 AV 596
+V
Sbjct: 235 SV 236
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 471 SAVQAHSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVS 599
+ ++ S ++SGS D SL +W KG+ L + GHT V+ ++
Sbjct: 156 AVIRLPSGELVSGSSDASLKLW--KGKTSLQTLSGHTDTVRGLA 197
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 414 WKGSLXPTPQDCLMHDDWVSAVQAHSSW-ILSGSYDNSLHIWSTKGQHKLAIPGHTSPVK 590
WKG + Q H D V + LS S+D S+ +W+ G+ L + GHTS V
Sbjct: 177 WKGKT--SLQTLSGHTDTVRGLAVMPDLGFLSASHDGSIRLWALSGEVLLEMVGHTSLVY 234
Query: 591 AV 596
+V
Sbjct: 235 SV 236
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 471 SAVQAHSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVS 599
+ ++ S ++SGS D SL +W KG+ L + GHT V+ ++
Sbjct: 156 AVIRLPSGELVSGSSDASLKLW--KGKTSLQTLSGHTDTVRGLA 197
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 637 SGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKM 795
SGS D A L +W++ + C+ TY+GH G + + DG SG D +
Sbjct: 117 SGSSD--ANLKIWDIRKK--GCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNV 165
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 426 LXPTPQDCLM----HDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAIPGHTSPV 587
L P P C + H V+++ SS WI SGS D S+ +W + L + +
Sbjct: 408 LRPYPNSCYLEYKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQFDEAI 467
Query: 588 KAVSW 602
V+W
Sbjct: 468 MCVAW 472
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 691 PVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
P C + Y+GH +S + G ASGS D
Sbjct: 412 PNSCYLEYKGHTGAVTSISTDSSGEWIASGSTD 444
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 637 SGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKM 795
SGS D L VW+ + C+ TY+GH G + S DG SG D +
Sbjct: 66 SGSSDTN--LRVWDTRKK--GCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNV 114
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 456 HDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVSW 602
H SAV+ H ++ SGS D +L +W T+ + + GHT + + +
Sbjct: 48 HRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEF 99
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 670 VWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDK 792
+W+V N CM TY GH + S DG++F + +DK
Sbjct: 309 IWDV-YNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDK 348
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 32.7 bits (71), Expect = 0.33
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSWVSF 611
H W+ +++ +++GS D + +WS ++G + H PV++V + F
Sbjct: 1021 HTKWIRSIRMVEDTLITGSDDWTARVWSVSRGSCDAVLACHAGPVQSVEYSPF 1073
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKL-AIPGHTSPVKAVSWVS 608
H V A+ + I+SGS D S+ +W + L + GH S V V +S
Sbjct: 898 HTGTVRAISSDRGKIVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCVKMLS 949
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 450 LMHDDWVSAVQAH--SSWILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKAVSW 602
L H D++ VQ H + WI+S S D ++ IW+ + + +++ GH V S+
Sbjct: 90 LGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASF 143
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 634 VSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDK-MFVFGV 810
VS S DQT +W W C+ GH+ C S + S S D+ + V+ +
Sbjct: 109 VSASDDQTIRIWNW----QSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
Query: 811 QAXXKKKXS 837
A KK S
Sbjct: 165 GALKKKSAS 173
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 456 HDDWVSAVQAHSS--WILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVS 599
H WV +V S W +GS D ++ IW G KL + GH V+ ++
Sbjct: 175 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLA 225
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 456 HDDWVSAVQAHSS--WILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVS 599
H WV +V S W +GS D ++ IW G KL + GH V+ ++
Sbjct: 169 HLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLA 219
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = +1
Query: 637 SGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKMFV 801
SGS D+T + VW N C+ GH +CL+V AD R AS DK ++
Sbjct: 353 SGSADKT--ICVWKRDGNIHTCLSVLTGHTGPVKCLAVEAD--REASERRDKKWI 403
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 468 VSAVQAHSSWILSGSYDNSLHIWSTKGQ-HKL--AIPGHTSPVKAVS 599
V ++ S + SGS D ++ +W G H + GHT PVK ++
Sbjct: 341 VLCLEVAGSLVFSGSADKTICVWKRDGNIHTCLSVLTGHTGPVKCLA 387
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Frame = +3
Query: 498 ILSGSYDNSLHIW---------STKGQHKLAIPGHTSPVKAVSWVSFQ 614
+ SG DN +HIW +T+ H+L HTS VKA++W FQ
Sbjct: 281 LASGGNDNVVHIWDRSVASSNSTTQWLHRLE--EHTSAVKALAWCPFQ 326
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 31.5 bits (68), Expect = 0.75
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Frame = +3
Query: 498 ILSGSYDNSLHIW---------STKGQHKLAIPGHTSPVKAVSWVSFQ 614
+ SG DN +HIW +T+ H+L HTS VKA++W FQ
Sbjct: 271 LASGGNDNVVHIWDRSVASSNSTTQWLHRLE--EHTSAVKALAWCPFQ 316
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 709 TYRGHDXGXECLSVSADGNRFASGSWDK 792
TYRGH+ C VS D +R +GS D+
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQ 74
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 709 TYRGHDXGXECLSVSADGNRFASGSWDK 792
TYRGH+ C VS D +R +GS D+
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQ 74
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 709 TYRGHDXGXECLSVSADGNRFASGSWDK 792
TYRGH+ C VS D +R +GS D+
Sbjct: 47 TYRGHNGAVWCCDVSRDSSRLITGSADQ 74
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 31.5 bits (68), Expect = 0.75
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 450 LMHDDWVSAVQAHSS--WILSGSYDNSLHIWSTKGQHKLAI-PGHTSPVKAVSW 602
L H D++ VQ H WI+S S D ++ IW+ + + +++ GH V S+
Sbjct: 90 LGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASF 143
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 634 VSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDK-MFVFGV 810
VS S DQT +W W C+ GH+ C S + S S D+ + V+ +
Sbjct: 109 VSASDDQTIRIWNW----QSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDI 164
Query: 811 QAXXKKKXS 837
A KK S
Sbjct: 165 GALRKKTVS 173
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 31.5 bits (68), Expect = 0.75
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 622 QATFVSGSHDQTAILWVWNVPRNPVDCMI--TYRGHDXGXECLSVSADGNRFASGSWDKM 795
Q T VS S D+T +W N +C + T GH ++VS DG+ ASG D +
Sbjct: 164 QPTIVSASWDKTVKVW------NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 217
Query: 796 FVFGVQAXXKKKXS 837
+ A KK S
Sbjct: 218 VLLWDLAEGKKLYS 231
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 634 VSGSHDQTAILWVWNVPRNPVDCMITYR---GHDXGXECLSVSADGNRFASGSWD 789
VS S D++ ILW + ++ + R GH E + +S+DG SGSWD
Sbjct: 32 VSASRDKSIILW--KLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 84
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 31.1 bits (67), Expect = 1.00
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 619 DQATFVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
D SG D T ++W + R C+ GH+ LS S +G+ ASGS D
Sbjct: 552 DGRYMASGDEDGTIMMWDLSTAR----CITPLMGHNSCVWSLSYSGEGSLLASGSAD 604
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 495 WILSGSYDNSLHIWSTK-GQHKLAIPGHTSPV 587
++LS S D ++ +WSTK + + GH PV
Sbjct: 432 FVLSSSADTTIRLWSTKLNANLVCYKGHNYPV 463
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 456 HDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKGQH 554
H+D+V+ +Q ++ LSGS D + IWS + +H
Sbjct: 545 HNDYVTCIQFSPVDENYFLSGSLDAKIRIWSIQDRH 580
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = +1
Query: 601 GFPSXGDQATFVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASG 780
G + Q T S S D T LW + + + ++ GH L+ S +G ASG
Sbjct: 504 GTNNPNKQLTLASASFDSTVKLWDAELGK----MLCSFNGHREPVYSLAFSPNGEYIASG 559
Query: 781 SWDK 792
S DK
Sbjct: 560 SLDK 563
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 474 AVQAHSSWILSGSYDNSLHIWSTK 545
A + +I SGS D S+HIWS K
Sbjct: 548 AFSPNGEYIASGSLDKSIHIWSIK 571
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTKG-QHKLAIPGHTSPVKAVSW 602
+ SG DN L +W+ Q L HT+ VKA++W
Sbjct: 350 LASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAW 385
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 709 TYRGHDXGXECLSVSADGNRFASGSWDK 792
TYRGH C +S D +R +GS D+
Sbjct: 74 TYRGHSGAVWCCDISRDSSRLITGSADQ 101
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 619 DQATFVSGSHDQTAILW 669
D + F++GSHD+TA LW
Sbjct: 231 DDSHFLTGSHDKTAKLW 247
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 30.7 bits (66), Expect = 1.3
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 628 TFVSGSHDQTAILWVWNVPRNPVDCMI--TYRGHDXGXECLSVSADGNRFASGSWDKMFV 801
T VS S D+T +W N +C + T GH ++VS DG+ ASG D + +
Sbjct: 165 TIVSASWDKTVKVW------NLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVIL 218
Query: 802 FGVQAXXKKKXS 837
A KK S
Sbjct: 219 LWDLAEGKKLYS 230
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 477 VQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
+ + + LSGS+D L +W G+ GHT V +V++
Sbjct: 71 LSSDGQFALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAF 113
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 492 SWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
++++SGS DNS IW KG + H V+ V+W
Sbjct: 66 AYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 103
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 492 SWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
++++SGS DNS IW KG + H V+ V+W
Sbjct: 125 AYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 492 SWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
++++SGS DNS IW KG + H V+ V+W
Sbjct: 125 AYLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAW 162
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIW 536
H D +S + H+ I SGS+D +L +W
Sbjct: 173 HADSISCLAVHAGIIYSGSWDKTLKVW 199
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 619 DQATFVSGSHDQTAILWVWNVPRN----PVDCMITYRGHDXGXECLSVSADGNRFASGS 783
D T VS S D + LW N + P C +TY+GH + +S A GS
Sbjct: 904 DSETIVSASTDNSLKLWNLNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVLDGYIACGS 962
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTKGQHKL-AIPGHTSPV 587
+ +GS D +HIW T + + +PGHT V
Sbjct: 287 VTAGSSDRMVHIWDTTSRRTIYKLPGHTGSV 317
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTKGQHK--LAIPGHTSPVKAVSWVS 608
I SGS+D + +W G K + + GH + + + W S
Sbjct: 68 IASGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTS 106
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 637 SGSHDQTAILWVWNVPRNPVDC--MITYRGHDXGXECLSVSADGNRFASGSWDK 792
SGSHD+ LW R DC + +GH L ++DG++ S S DK
Sbjct: 70 SGSHDREIFLW-----RVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDK 118
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 685 RNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKMF 798
RN + +R H CL++S D SGSWDK F
Sbjct: 199 RNRSSAALGFR-HLDAISCLALSEDKRLLYSGSWDKTF 235
>At2g09900.1 68415.m01028 hypothetical protein
Length = 175
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 393 TRLRSNTWKGSLXPTPQDCLMHD 461
TR +TWK S+ TP DC++ D
Sbjct: 103 TRPHCSTWKSSITITPLDCILDD 125
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLA----IPGHTSPVKAVSWV 605
HD + ++ S +LSGS D ++ IW + + GHT PVK+++ V
Sbjct: 325 HDKAILSLFNVSDLLLSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAV 378
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKG-QHKLAIPGHTSPVKAVS 599
H D V+A+ +I S S+D +L IW + K +I H V A++
Sbjct: 194 HADAVTALAVSDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIA 242
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 637 SGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDK 792
+G+ D + + W +N N + + GH L V A NR SGS DK
Sbjct: 245 AGTQDGSILAWRYNAATNCFEPSASLTGHTLAVVTLYVGA--NRLYSGSMDK 294
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 477 VQAHSSWILSGSYDNSLHIWS-TKGQ-HKLAIPGHTSPVKAVSW 602
+ ++LSGS D + +IW K Q + + GH V AV W
Sbjct: 346 ISPDGEYVLSGSSDGNAYIWQVNKPQVDPIILKGHDFEVTAVDW 389
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 507 GSYDNSLHIW---STKGQHKLAIPGHTSPVKAVSW 602
GS+D + +W +T + + GH S VK+VSW
Sbjct: 66 GSFDGNTCVWENFATDSESVSVLRGHESEVKSVSW 100
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 634 VSGSHDQTAILWVWNVPRNPVDCMITYR---GHDXGXECLSVSADGNRFASGSWD 789
V+ S D++ ILW + ++ + R GH E + +S+DG SGSWD
Sbjct: 32 VTASRDKSIILW--KLTKDDKSYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 84
Score = 29.1 bits (62), Expect = 4.0
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 628 TFVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKMFVFG 807
T VS S D+T + VWN+ + + GH ++VS DG+ ASG D + +
Sbjct: 165 TIVSASWDKT--VKVWNLQNCKLRNSLV--GHSGYLNTVAVSPDGSLCASGGKDGVILLW 220
Query: 808 VQAXXKKKXS 837
A KK S
Sbjct: 221 DLAEGKKLYS 230
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 477 VQAHSSWILSGSYDNSLHIWS-TKGQHKLAIPGHTSPVKAVSW 602
+ + + LSGS+D L +W G+ GHT V +V++
Sbjct: 71 LSSDGQFALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAF 113
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +1
Query: 634 VSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWDKMFV 801
++GS D + LW+WN + M + GH+ C + DG +GS D +
Sbjct: 171 LAGSEDCS--LWMWNADKEAYLNM--FSGHNLNVTCGDFTPDGKLICTGSDDASLI 222
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +1
Query: 610 SXGDQATFVSGSHDQTAILWVWNVPRNPVDCMITYRGHDXGXECLSVSADGNRFASGSWD 789
S D +G D A LW + D GH CL+ S DG ASG D
Sbjct: 79 SPTDATLVATGGGDDKAFLW--KIGNG--DWAAELPGHKDSVSCLAFSYDGQLLASGGLD 134
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Frame = +3
Query: 444 DCL---MHDDWVSAVQ---AHSSWILSGSYDNSLHIWSTKG 548
DCL H+ +V++VQ + ++ +SGS D + IW+ G
Sbjct: 360 DCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISG 400
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 453 MHDDWVSAVQ-----AHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSPVKAVSWVSFQX 617
+H D VSAV ++GSYD S+ I+ G H I HT ++ V V +
Sbjct: 274 VHKDHVSAVMDIDFSPTGREFVTGSYDRSVRIFPYNGGHSREI-YHTKRMQRVFCVKYSC 332
Query: 618 RSSYI 632
++Y+
Sbjct: 333 DATYV 337
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 450 LMHDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAI 566
L H DWV + H + + S S + ++IW + LAI
Sbjct: 293 LRHSDWVWGLAPHETTLASTS-GSDVYIWDVSSETPLAI 330
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIWSTKGQHKLAIPGHTSP 584
H VS + + + SGS+D ++ +WS L + G +P
Sbjct: 626 HKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETP 668
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKAVSW 602
+ S S D + +W G K+ + HT V+AV+W
Sbjct: 281 LASASADKKVKVWDVATGTCKITMEHHTKEVQAVAW 316
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 498 ILSGSYDNSLHIWSTK-GQHKLAIPGHTSPVKAVSW 602
+ S S D + +W G K+ + HT V+AV+W
Sbjct: 249 LASASADKKVKVWDVATGTCKITMEHHTKEVQAVAW 284
>At2g02470.1 68415.m00186 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 256
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 441 QDCLMHDDWVSAVQAHS-SWILSGSY 515
+D + DWVS V HS SW+LS ++
Sbjct: 82 RDGMQEKDWVSLVAVHSDSWLLSVAF 107
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 456 HDDWVSAVQAHSSWILSGSYDNSLHIW 536
HDD V++V S + +GS D ++ +W
Sbjct: 176 HDDAVNSVTTAESLVFTGSADGTVKVW 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,249
Number of Sequences: 28952
Number of extensions: 308110
Number of successful extensions: 903
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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