Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P24
         (951 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66130.1 68418.m08331 cell cycle checkpoint protein-related w...    30   2.6  
At5g01730.1 68418.m00091 expressed protein                             29   6.0  
At2g46370.2 68415.m05771 auxin-responsive GH3 family protein sim...    29   6.0  
At2g46370.1 68415.m05770 auxin-responsive GH3 family protein sim...    29   6.0  
At4g19280.1 68417.m02842 hypothetical protein                          28   7.9  
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    28   7.9  
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof...    28   7.9  
At1g64140.1 68414.m07266 expressed protein similar to putative d...    28   7.9  

>At5g66130.1 68418.m08331 cell cycle checkpoint protein-related weak
           similarity to cell cycle checkpoint protein RAD17 [Homo
           sapiens] GI:4102916
          Length = 599

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/102 (23%), Positives = 44/102 (43%)
 Frame = +2

Query: 143 VTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGL 322
           V  R+CRE     C V  + ID    +    ++    +   F   P+ + TK+K+   G+
Sbjct: 298 VLQRICRE---EHCKVTTMEIDQMATASGGDIRHAITSLQLFSVKPELNHTKIKSPRPGM 354

Query: 323 KNGAEIPFDALYNADACTLTSCPTEAGKTQTLDFSLHIGKKL 448
           ++        +Y+     ++SC    G+ +TL     +GK L
Sbjct: 355 EDNYHGNEQTMYSGLDSGISSC---FGRDETLSLFHALGKFL 393


>At5g01730.1 68418.m00091 expressed protein
          Length = 1192

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +2

Query: 164 EVDASACTVNEVRIDPCVN-SRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEI 340
           + +A AC V EVR DP +N S   HL   K  +V  D     +       +F ++  +EI
Sbjct: 526 KANAEACEVFEVRRDPMLNISPETHLL--KVTQVPQDAYEGGTNDVHSQHVFSVETASEI 583

Query: 341 PFDALYNADACTLTSCPTEAGKTQTLDFSLHIGKKLP 451
              AL      ++T+   EA +++  D S   G  +P
Sbjct: 584 SVSALVEDQFSSITNQEIEALESE--DISSEAGHFIP 618


>At2g46370.2 68415.m05771 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 404 KTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNES--QMCC 514
           K + +DFS +I      G++   W++  E NE   Q CC
Sbjct: 456 KIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 494


>At2g46370.1 68415.m05770 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +2

Query: 404 KTQTLDFSLHIGKKLPTGNFEFKWKLWNEDNES--QMCC 514
           K + +DFS +I      G++   W++  E NE   Q CC
Sbjct: 456 KIEVIDFSSYIDVSTDPGHYAIFWEISGETNEDVLQDCC 494


>At4g19280.1 68417.m02842 hypothetical protein 
          Length = 254

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 505 DVLLQNVKKLALSTLLTDCVVNTLCMYLHKKC 600
           D+++QN+++   +T+L+  +  + C Y  K C
Sbjct: 27  DLIVQNIERQCFNTVLSIIICLSTCFYFSKTC 58


>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 260 VSFDFTPQFSTTKLKTGLFGLKNGAEIPFDAL 355
           VSF+    F+T  LK G +   +G  +PFD +
Sbjct: 199 VSFEEVDDFTTADLKIGFYAGDHGDGLPFDGV 230


>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 301

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 329 GAEIPFDALYNADACTLTSCPTE 397
           G EI F+ +YN D  T T  PTE
Sbjct: 241 GREIRFEEVYNEDVQTRTKAPTE 263


>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 359 NADACTLTSCPTEAGKTQT----LDFSLHIGKKLPTGN 460
           +A ACT  S   E  +  +    LDFSLH+G + PT +
Sbjct: 84  SATACTSLSSARETEEASSMDIELDFSLHLGNEKPTAS 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,173
Number of Sequences: 28952
Number of extensions: 279515
Number of successful extensions: 777
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2285480280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)