Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P23
         (981 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    31   0.010
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.096
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.096
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.39 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.90 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   2.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   6.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   8.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   8.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   8.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   8.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   8.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   8.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   8.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   8.4  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    22   8.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   8.4  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +3

Query: 588 PPXXPPPPPXPPPPXXSPAXPPLPPXXPPPXPPXXPXPXXPP 713
           P    P P  PP        PPLP   P P PP  P     P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +1

Query: 838 PPPXSPXXPXLXPXXPXXPXPPPXPXPXXXPXXXXXP 948
           P P  P    L    P  P  PP P P   P     P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
 Frame = +3

Query: 600 PPPPPXPPPPXXSPAXPP---LPPXXPP-PXPPXXPXPXXPPP 716
           P   P P      PA PP   L    PP P  P  P P   PP
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 671 PPXPPXXPXPPXPXXPP 721
           PP P   P P  P  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = +3

Query: 681 PPXXPXPXXPPPXPPPPHXXXXPPPXPXPPXAPPXPXXXPPXPXXLXP 824
           P   P P    P P  P         P  P  PP P      P  + P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 0.096
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +3

Query: 621 PPPXXSPAXPPLPPXXPPPXP-PXXPXPXXPPPXPPPPHXXXXPPPXP 761
           P P  S A P +    P     P  P        PPPPH    PP  P
Sbjct: 702 PSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 0.096
 Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
 Frame = +3

Query: 621 PPPXXSPAXPPLPPXXPPPXP-PXXPXPXXPPPXPPPPHXXXXPPPXP 761
           P P  S A P +    P     P  P        PPPPH    PP  P
Sbjct: 594 PSPSTSVASPSVSVASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNP 641


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 726 PPHXXXXPPPXPXPPXAPPXPXXXP 800
           PPH    PP    PP   P P   P
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 588 PPXXPPPPPXPPPPXXSPAXPPLPPXXPPPXPP 686
           P    P P  PP         PLP   P P PP
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVPPLPLPP 187


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 676 GGGXXGGRGGXAGEXXGGG 620
           GGG  GGR G  G+  GGG
Sbjct: 92  GGGRGGGRDGDRGD--GGG 108



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = -3

Query: 625 GGGXGGG-GGXXGGGXGXE 572
           GGG GGG  G  G G G E
Sbjct: 92  GGGRGGGRDGDRGDGGGEE 110



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 845 GGGXGGGXXEXXGXGG 798
           GGG GGG     G GG
Sbjct: 92  GGGRGGGRDGDRGDGG 107



 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 727 GGGXGGGXXGXGXXGG 680
           GGG GGG  G    GG
Sbjct: 92  GGGRGGGRDGDRGDGG 107


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 579 PXPPPXXPPPPPXPPPPXXSPAXPPLPPXXPPPXPPXXPXP 701
           P  P   PP    P P   SP         P   P   P P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPP 105



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 12/47 (25%), Positives = 12/47 (25%)
 Frame = +3

Query: 660 PXXPPPXPPXXPXPXXPPPXPPPPHXXXXPPPXPXPPXAPPXPXXXP 800
           P  P   PP    P      P         P  P  P  PP     P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +1

Query: 898 PPPXPXPXXXPXXXXXPPXPPPXPPP 975
           PPP P     P        P   PPP
Sbjct: 11  PPPAPQSAATPISSSGMTSPAAAPPP 36


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +3

Query: 612 PXPPPPXXSPAXPPLPPXXPPPXPPXXPXPXXP 710
           P P     SP   P  P  P P P   P    P
Sbjct: 71  PLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEP 103


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 671  PPXPPXXPXPPXPXXPPP 724
            PP PP    PP P    P
Sbjct: 1376 PPIPPTSEKPPLPEELKP 1393


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 654 LPPXXPPPXPPXXP 695
           +PP  P P PP  P
Sbjct: 114 VPPLTPSPGPPSHP 127


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +3

Query: 606 PPPXPPPPXXSPAXPPLPPXXPPP 677
           PP    PP  +P  P  P   P P
Sbjct: 39  PPACYSPPQVAPQYPQHPYAAPAP 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,061
Number of Sequences: 336
Number of extensions: 6249
Number of successful extensions: 61
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)