Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P22
(1061 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 96 9e-21
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 78 2e-15
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 76 1e-14
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 73 5e-14
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 67 5e-12
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 52 1e-07
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 50 7e-07
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 48 2e-06
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 47 4e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 44 4e-05
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 37 0.004
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.013
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 34 0.039
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 32 0.16
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.84
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.84
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.84
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 29 1.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.5
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 29 1.5
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 28 1.9
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 28 2.6
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 28 2.6
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 4.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 5.9
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 95.9 bits (228), Expect = 9e-21
Identities = 48/101 (47%), Positives = 62/101 (61%)
Frame = +3
Query: 111 LMANKVKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAX 290
L ++KLQIWDTAGQ FRTITTAYYRG+MGI+L+Y VT+ SF A
Sbjct: 53 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS 112
Query: 291 ADVDKMILGXXCDLHSQRQVSKERGEXLXIEXHIXSXQTSA 413
+V K+++G CD QRQVS E+G+ L E + + SA
Sbjct: 113 ENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASA 153
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +2
Query: 77 VXIDFKIRTIDLDGQQ 124
+ IDFKIRTI+LDG++
Sbjct: 42 IGIDFKIRTIELDGKR 57
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 77.8 bits (183), Expect = 2e-15
Identities = 39/92 (42%), Positives = 50/92 (54%)
Frame = +3
Query: 123 KVKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVD 302
++KLQIWDTAGQ FR++ YYRG+ G +LVY VTN SF A + +
Sbjct: 61 RIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTIC 120
Query: 303 KMILGXXCDLHSQRQVSKERGEXLXIEXHIXS 398
++ G DL +QRQVS E E HI S
Sbjct: 121 VVLAGSKSDLQNQRQVSTEEAAEFCSEKHISS 152
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 75.8 bits (178), Expect = 1e-14
Identities = 37/97 (38%), Positives = 54/97 (55%)
Frame = +3
Query: 123 KVKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVD 302
K+K QIWDTAGQ +R IT+AYYRG++G ++VY +T SF A +++
Sbjct: 58 KIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIV 117
Query: 303 KMILGXXCDLHSQRQVSKERGEXLXIEXHIXSXQTSA 413
M++G DL R VS E + E ++ +TSA
Sbjct: 118 IMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSA 154
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 73.3 bits (172), Expect = 5e-14
Identities = 44/127 (34%), Positives = 62/127 (48%)
Frame = +3
Query: 111 LMANKVKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAX 290
L VKLQIWDTAGQ FRTIT++YYRG+ GI++VY VT+ SF A
Sbjct: 52 LEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAV 111
Query: 291 ADVDKMILGXXCDLHSQRQVSKERGEXLXIEXHIXSXQTSAXXLPPXSQXAFYPXXRAPQ 470
V+++++G D+ ++ V + +I +TSA Q AF R +
Sbjct: 112 EGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQ-AFLTMSRQIK 170
Query: 471 XHXGKXT 491
G T
Sbjct: 171 ERMGNNT 177
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 66.9 bits (156), Expect = 5e-12
Identities = 36/96 (37%), Positives = 51/96 (53%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVDK 305
V+LQ+WDTAGQ FR++ +Y R S ++VY +TN SF DV
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVII 119
Query: 306 MILGXXCDLHSQRQVSKERGEXLXIEXHIXSXQTSA 413
+++G DL +RQV++E GE E I +TSA
Sbjct: 120 VLVGNKTDLADKRQVTQEEGEKKAKELKIMHMETSA 155
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.4 bits (120), Expect = 1e-07
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Frame = +3
Query: 132 LQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVDKMI 311
L + DTAGQ + + Y R G +LVY +T+ SF D ++
Sbjct: 58 LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVV 117
Query: 312 L-GXXCDLHSQRQVSKERGEXLXIEXHIXSXQTSAXXLPPXSQXAFYPXXR 461
L CDL ++R VS+ GE L H +TSA L + AFY R
Sbjct: 118 LVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSA-KLRLNVEEAFYSLVR 167
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 49.6 bits (113), Expect = 7e-07
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVDK 305
VKL+IWDTAGQ ++++ YYR + ++VY +T S A +
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 306 MILGXXCDLHSQRQ-VSKERGEXLXIEXHIXSXQTSA 413
+ G DL +R+ V K E E ++ +TSA
Sbjct: 124 ALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSA 160
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 48.4 bits (110), Expect = 2e-06
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSF 245
V LQ+WDTAGQ F+++ A+YRG+ +LVY V N SF
Sbjct: 57 VTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSF 96
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 47.2 bits (107), Expect = 4e-06
Identities = 20/40 (50%), Positives = 28/40 (70%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSF 245
V LQ+WDTAGQ F+++ A+YRG+ ++VY V N SF
Sbjct: 57 VTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSF 96
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 44.0 bits (99), Expect = 4e-05
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 135 QIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXAD-VDKMI 311
+I DTAGQ + + + + G G +LVY +T+ SF + V ++
Sbjct: 57 EIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVV 116
Query: 312 LGXXCDLHSQRQVSKERGEXLXIEXHIXSXQTSA 413
+G DLH QR V+ E G+ L E + SA
Sbjct: 117 VGNKSDLHMQRAVTAEEGKALANEWKCAWTEASA 150
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 37.1 bits (82), Expect = 0.004
Identities = 25/70 (35%), Positives = 26/70 (37%)
Frame = -2
Query: 1048 GGXGGXXGRXRGXGGARXGRXGXGAXXVXGX*XGRLSVEXGSRVAXGAXGXEXGARGGXX 869
G GG G G GG GR G G GR G+R G G G RGG
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGR----GGARGGRGGRGGARGGRGGSS 61
Query: 868 XGXXGWGRGA 839
G G GA
Sbjct: 62 GGRGGAKGGA 71
Score = 35.1 bits (77), Expect = 0.017
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 1050 GGGXXGXXGGXGGGAVXGXGGXGXVRXGXSG 958
GGG G GG GGA G GG G R G G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Score = 33.5 bits (73), Expect = 0.051
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = -2
Query: 1060 GLXGGGXGGXXGRXRGXGGARXGRXG 983
G GGG GG G G GGAR GR G
Sbjct: 34 GARGGGRGGARGGRGGRGGARGGRGG 59
Score = 33.1 bits (72), Expect = 0.068
Identities = 24/59 (40%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = -2
Query: 910 GAXGXEXGARGGXXXGXXGWG---RGAXGXGXGXGLWGGVGXE--XXGGGXXXSPGQGG 749
G G G RGG G G+G GA G G G G GG G GG S G+GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG-GARGGRGGRGGARGGRGGSSGGRGG 66
Score = 30.7 bits (66), Expect = 0.36
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Frame = -2
Query: 928 GSRVAXGAXGXEXGARGGXXXGXXGWGRGA--XGXGXGXGLWGGVGXEXXGGG 776
GSR G G GG G G GRG G G G GG G G G
Sbjct: 13 GSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 29.5 bits (63), Expect = 0.84
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -2
Query: 889 GARGGXXXGXXGWGRGAXGXGXGXGLWGGVGXEXXGGGXXXSPGQGG 749
G+RGG G GRG G G G GG G GG G+GG
Sbjct: 6 GSRGGR--GGSRGGRGGFNGGRG-GFGGGRGGARGGGRGGARGGRGG 49
Score = 29.1 bits (62), Expect = 1.1
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = -2
Query: 910 GAXGXEXGARGGXXXGXXGWGRGAXGXGXG--XGLWGGVGXEXXGGGXXXSP 761
G G GARGG G G GRG G G G GG G G P
Sbjct: 27 GFGGGRGGARGGGRGGARG-GRGGRGGARGGRGGSSGGRGGAKGGAKVIIEP 77
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 35.5 bits (78), Expect = 0.013
Identities = 31/106 (29%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Frame = -2
Query: 1060 GLXGGGXGGXXGRXRGXGGARXGRXGXGAXXVXGX*XGRLSVEXG--SRVAXGAXGXEXG 887
GL G GG G G G G G G G G G G
Sbjct: 162 GLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHG 221
Query: 886 ARGGXXXGXXGWGRGAXGXGXGXGLWGGVGXEXXGGGXXXSPGQGG 749
GG G G+ G G G G G +GG GG G GG
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 1060 GLXGGGXGGXXGRXRGXGGARXGRXGXG 977
G GGG GG G G GG G G G
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGGPG 272
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.9 bits (74), Expect = 0.039
Identities = 18/88 (20%), Positives = 35/88 (39%)
Frame = +3
Query: 120 NKVKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADV 299
N ++L +WDTAGQ + + + Y + IM+ + V + S V
Sbjct: 59 NSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGV 118
Query: 300 DKMILGXXCDLHSQRQVSKERGEXLXIE 383
+++ CDL + + + + E
Sbjct: 119 KLVLVALKCDLRGADEEQVDHSKIIDYE 146
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 31.9 bits (69), Expect = 0.16
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -2
Query: 928 GSRVAXGAXGXEXGARGGXXXGXXGWGRGAXGXGXGXGLWGGVGXEXXGG--GXXXSPGQ 755
G+R G G RGG G+G + G G G G GG G GG G +
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRG-GFGGGSRGGFGGGSRGGSRGGFRGGSR 187
Query: 754 GG 749
GG
Sbjct: 188 GG 189
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = +2
Query: 977 TXPXPPX---PXTAPPPXPPXXPXXPPPP 1054
T P PP P + PP P P PPPP
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPPP 1054
P + P PP P + PP P P PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPP 1051
P R P +AP P PP PPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.84
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPPP 1054
P P PP P PP PP PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPP----PPPPP 30
Score = 26.6 bits (56), Expect = 5.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 989 PPXPXTAPPPXPPXXPXXPPPP 1054
PP PPP P P PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.84
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPPP 1054
P+ PP + P PP P PPPP
Sbjct: 177 PAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 989 PPXPXTAPPPXPPXXPXXPPP 1051
PP P + PPP P P PP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPP 185
Score = 28.3 bits (60), Expect = 1.9
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPP---PXPPXXPXXPPPPQ 1057
P R PP P +APP PP PPP Q
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQ 176
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPP 1051
PS P P PP P P PPP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPP 152
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 29.1 bits (62), Expect = 1.1
Identities = 16/78 (20%), Positives = 33/78 (42%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVDK 305
V+L +WDTAGQ + + Y S I++ + V + S + +
Sbjct: 54 VELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPI 113
Query: 306 MILGXXCDLHSQRQVSKE 359
+++ DL + ++ +E
Sbjct: 114 LLVACKADLRNDPKIIEE 131
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 1.1
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 968 PSRTXPXP-PXPXTAPPPXPPXXPXXPPPP 1054
P+ P P P P PPP P PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = +2
Query: 974 RTXPXPPXPXTAPPPXPPXXPXXPPPP 1054
++ P PP P P P P PP P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP 756
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +2
Query: 971 SRTXPXP-PXPXTAPPPXPPXXPXXPPP 1051
SRT P P P + PP PP P PP
Sbjct: 410 SRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPPP 1054
P P P A PP PP P PP P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +2
Query: 989 PPXPXTAP--PPXPPXXPXXPPPP 1054
PP P P PP PP P PP P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAP--PPXPPXXPXXPPPP 1054
P PP P +AP PP P P PP P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 27.1 bits (57), Expect = 4.5
Identities = 23/111 (20%), Positives = 31/111 (27%), Gaps = 6/111 (5%)
Frame = +1
Query: 739 PPLXXPGPANXTPPXLXXXXXXXXXXXXXXXXXXPPSPTPXPPXXXLLAHXSPXLXRXXQ 918
PP+ P++ P + SP PP +P + +
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 919 PSTPXPRSTAXFTPRXPXXHRPXXSPSXHR------PXPXSSXXTXXPPPP 1053
P P P S RP P R P S + PPPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 968 PSRTXPXPPX-PXTAPPPXPPXXPXXPPPP 1054
PS PP P +APP P P PP P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 983 PXPPXPXTAPPPXPP 1027
P PP +APPP PP
Sbjct: 352 PLPPQGRSAPPPPPP 366
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVDK 305
V+L +WDTAGQ + + Y + I++ + + + S +V
Sbjct: 56 VQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPF 115
Query: 306 MILGXXCDLHS 338
+++G DL S
Sbjct: 116 ILVGMKADLRS 126
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 28.3 bits (60), Expect = 1.9
Identities = 15/78 (19%), Positives = 33/78 (42%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXVTNDXSFXXXXXXXXXXXXXAXADVDK 305
++L +WDTAGQ + + Y S +++ + V S +++
Sbjct: 54 IELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPI 113
Query: 306 MILGXXCDLHSQRQVSKE 359
+++G DL + + +E
Sbjct: 114 LLVGCKVDLRNDPKTIEE 131
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 123 KVKLQIWDTAGQXXFRTITTAYY-RGSMGIMLVYXVTNDXSF 245
++ +WDTAGQ + YY +G GI +++ VT+ ++
Sbjct: 57 EICFNVWDTAGQEKLGGLRDGYYIQGQCGI-IMFDVTSRITY 97
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 126 VKLQIWDTAGQXXFRTITTAYYRGSMGIMLVYXV 227
++L +WDTAGQ + + Y S I+L + +
Sbjct: 64 IELALWDTAGQEEYDRLRPLSYPNSNVILLCFSI 97
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -3
Query: 1053 GGGGXXGXXGGXGGGAVXGXGGXGXVRXGXSG 958
GGG GG GG + G GG G +G
Sbjct: 225 GGGLGGAGLGGLGGAGLGGFGGANNATAGIAG 256
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPP-PXPPXXPXXP 1045
PS P P P TAPP P P P P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVP 1053
Score = 26.2 bits (55), Expect = 7.8
Identities = 20/74 (27%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Frame = +1
Query: 841 PPSPTPX---PPXXXLLAHXSPXLXRXXQPSTPXPRSTAXFTPRXPXXHRPXXSPSXHRP 1011
PP P P PP P P P S P+ P PS P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 1012 XPXSSXXTXXPPPP 1053
P S PPP
Sbjct: 1200 VPKPSVGVPPVPPP 1213
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 968 PSRTXPXPPXPXTAPPPXPPXXPXXPPP 1051
PS P P P PP PP P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -2
Query: 880 GGXXXGXXGWGRGAXGXGXGXGLWGGVGXEXXGGGXXXSPGQG 752
GG G G+G G G G G GG G GG +P +G
Sbjct: 447 GGSRGGRGGFG-GRGGFGGRGGFGGGRG-RGRGGARSGNPNRG 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,240,564
Number of Sequences: 5004
Number of extensions: 29678
Number of successful extensions: 269
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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