Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P20
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 915 PXXPGXPPPPP 947
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/34 (35%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = +3

Query: 849 PPPXP---PXXXGRPXSPPPAAXXPPXXPGXPPP 941
           P P P   P    R   P P+   PP  P   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +1

Query: 865 PXXXXAPPPXXPPXXXPPXXP 927
           P     PPP  PP   P   P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNP 60



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = -3

Query: 305 GGFFXPXFXXXXPPPPXXFXXXGXPPPPXXGG 210
           GG   P      PP P      G PP P   G
Sbjct: 406 GGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPG 437


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.155    0.549 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,782
Number of Sequences: 438
Number of extensions: 5830
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)