Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P19
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.30 
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    30   0.39 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   1.2  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 274 AIAGPALINPSRTXRPTFSIFLKSFHLGSGAALTAP 167
           AIA P +I+P  + RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 391 LNSLKLEIHNFLQSCFKLNASLEFNDKVY 305
           L  L LEI NF Q+   L  +LE+ +KVY
Sbjct: 205 LGELSLEIENFSQASQDLKTALEWKEKVY 233


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -1

Query: 250 NPSRTXRPTFSIF----LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEF 86
           N S   +P F       L+S H L S  + T PR   N    +    K + P  ++   F
Sbjct: 274 NTSSLEKPKFDYLPPNILQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAF 333

Query: 85  KIPIQYRSTRTLRMIK 38
           +I + Y  TR L  I+
Sbjct: 334 RISVMYAVTRILPAIQ 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,245
Number of Sequences: 5004
Number of extensions: 37103
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)