Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P19
         (904 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  30   2.9  
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   3.9  
SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)            28   9.0  
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            28   9.0  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/82 (24%), Positives = 20/82 (24%)
 Frame = +2

Query: 632 PPXXXXXXXPXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXX 811
           PP       P   PP    P        P  P PP           P  P   P      
Sbjct: 149 PPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPN----PPYPPPPNPPYPPPPNAPNP 204

Query: 812 PXPXXXXXPPXXXXXPXXXPXP 877
           P P     PP     P   P P
Sbjct: 205 PPPNPPYPPPPNAPNPPYPPPP 226



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/87 (24%), Positives = 21/87 (24%), Gaps = 5/87 (5%)
 Frame = +2

Query: 632 PPXXXXXXXPXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXP-----XXXPX 796
           PP       P   PP    P        P  P PP   A       P  P        P 
Sbjct: 84  PPTNFSPNPPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPS 143

Query: 797 XXXXXPXPXXXXXPPXXXXXPXXXPXP 877
                P P     PP     P   P P
Sbjct: 144 PNAPYPPPPNPPYPPPLYPPPPNPPPP 170


>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/70 (24%), Positives = 17/70 (24%)
 Frame = +2

Query: 632 PPXXXXXXXPXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXX 811
           PP       P   PP    P        P  P PP  G           P   P      
Sbjct: 346 PPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTNGPPPPPPPTNGPPPPPPPTNGPP 405

Query: 812 PXPXXXXXPP 841
           P P     PP
Sbjct: 406 PPPPPTNGPP 415


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/70 (24%), Positives = 17/70 (24%)
 Frame = +1

Query: 631 PXXPXXPPXPXXXXPXXXXPPXXXXXXXXXXPXPPXXGGXXXXXXXPXXXXXPPXXXXXX 810
           P  P  PP P    P    PP          P PP           P     PP      
Sbjct: 372 PPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431

Query: 811 PXXXXXXXPP 840
           P       PP
Sbjct: 432 PALRLACAPP 441



 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/67 (23%), Positives = 16/67 (23%)
 Frame = +2

Query: 671 PPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXXPXPXXXXXPPXXX 850
           PP    P        P  P PP           P  P   P      P P     PP   
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424

Query: 851 XXPXXXP 871
             P   P
Sbjct: 425 PPPPPPP 431


>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 185 SSADRAESQHQREDEAQNTYKIHFTEIL*CRRIQNSN 75
           +  D  E + + E+E +++Y+  +TEIL  RR+ + N
Sbjct: 341 NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 377


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 185  SSADRAESQHQREDEAQNTYKIHFTEIL*CRRIQNSN 75
            +  D  E + + E+E +++Y+  +TEIL  RR+ + N
Sbjct: 985  NQVDGEEEEEEEEEEEEDSYEDEYTEILQRRRVVSFN 1021


>SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)
          Length = 409

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 236 VASHFLNFLEELPPGLGSSADRAESQHQREDEAQNTYKI 120
           + S  L+ +E+  PG+G   DR  +   R+ EAQ   ++
Sbjct: 12  IMSRILSTIEKTQPGVGVVHDRQRTHDPRDKEAQEEERV 50


>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 232  RPTFSIFLKSFHLGSGAALTAPRASTN 152
            RP+F + LKS   G+GAA   P   TN
Sbjct: 1831 RPSFKLVLKSLEEGNGAARVRPCRITN 1857


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,572,322
Number of Sequences: 59808
Number of extensions: 272354
Number of successful extensions: 671
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)