Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P19
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    31   1.4  
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex...    28   7.4  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    28   9.7  

>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/76 (23%), Positives = 18/76 (23%)
 Frame = +2

Query: 632 PPXXXXXXXPXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXX 811
           PP       P   PP    P        P  P PP           P  P   P      
Sbjct: 438 PPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSP 497

Query: 812 PXPXXXXXPPXXXXXP 859
           P P     PP     P
Sbjct: 498 PPPPPPPPPPPVYSPP 513



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/70 (24%), Positives = 17/70 (24%)
 Frame = +1

Query: 631 PXXPXXPPXPXXXXPXXXXPPXXXXXXXXXXPXPPXXGGXXXXXXXPXXXXXPPXXXXXX 810
           P  P  PP P    P    PP          P PP           P     PP      
Sbjct: 469 PPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPA 528

Query: 811 PXXXXXXXPP 840
           P       PP
Sbjct: 529 PTPVYCTRPP 538



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/90 (22%), Positives = 20/90 (22%)
 Frame = +1

Query: 607 IFITXXXXPXXPXXPPXPXXXXPXXXXPPXXXXXXXXXXPXPPXXGGXXXXXXXPXXXXX 786
           IF T       P   P P    P    PP          P PP           P     
Sbjct: 416 IFSTPPTLTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPP 475

Query: 787 PPXXXXXXPXXXXXXXPPXXXXXXXXPXXP 876
           PP      P       PP        P  P
Sbjct: 476 PPPVYSPPPPSPPPPPPPVYSPPPPPPPPP 505



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/73 (23%), Positives = 17/73 (23%)
 Frame = +2

Query: 659 PXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXXPXPXXXXXP 838
           P   PP    P        P  P PP           P  P   P      P P     P
Sbjct: 434 PVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPP 493

Query: 839 PXXXXXPXXXPXP 877
                 P   P P
Sbjct: 494 VYSPPPPPPPPPP 506



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/85 (23%), Positives = 21/85 (24%), Gaps = 3/85 (3%)
 Frame = +2

Query: 632 PPXXXXXXXPXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXP---XXXPXXX 802
           PP       P   PP    P        P  P PP   +       P  P      P   
Sbjct: 443 PPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPP 502

Query: 803 XXXPXPXXXXXPPXXXXXPXXXPXP 877
              P P     PP     P   P P
Sbjct: 503 PPPPPPVYSPPPPPVYSSPPPPPSP 527


>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycsimilar to extensin-like protein [Lycopersicon
           esculentum] gi|5917664|gb|AAD55979; contains
           leucine-rich repeats, Pfam:PF00560; contains proline
           rich extensin domains, INTERPRO:IPR002965
          Length = 470

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/73 (23%), Positives = 17/73 (23%)
 Frame = +2

Query: 659 PXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXXPXPXXXXXP 838
           P   PP    P        P  P PP           P  P   P      P P     P
Sbjct: 377 PSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYPP 436

Query: 839 PXXXXXPXXXPXP 877
           P         P P
Sbjct: 437 PPSPPYVYPPPPP 449



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/73 (24%), Positives = 18/73 (24%)
 Frame = +2

Query: 659 PXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXXPXPXXXXXP 838
           P   PP    P        P  P PP           P  P   P      P P     P
Sbjct: 376 PPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPPYVYP 435

Query: 839 PXXXXXPXXXPXP 877
           P     P   P P
Sbjct: 436 P-PPSPPYVYPPP 447


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/76 (22%), Positives = 18/76 (23%)
 Frame = +2

Query: 632 PPXXXXXXXPXXXPPXXXXPXXXXXXXXPXXPXPPXGGAXXXXXXXPXXPXXXPXXXXXX 811
           PP       P   PP    P        P    PP   +       P  P   P      
Sbjct: 527 PPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYS 586

Query: 812 PXPXXXXXPPXXXXXP 859
           P P     PP     P
Sbjct: 587 PPPPPVHSPPPPVHSP 602


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,536
Number of Sequences: 28952
Number of extensions: 221606
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)