Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P18
(957 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 183 7e-45
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 104 3e-21
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 102 1e-20
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 81 3e-14
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 77 5e-13
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 75 3e-12
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 70 1e-10
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 68 3e-10
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 68 4e-10
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 68 4e-10
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 67 5e-10
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 65 2e-09
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 64 4e-09
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 64 5e-09
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 62 3e-08
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 60 6e-08
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 60 6e-08
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 60 1e-07
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 58 3e-07
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 54 5e-06
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 6e-04
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 45 0.003
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 44 0.006
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 43 0.010
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 43 0.013
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.071
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 38 0.38
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 35 3.5
UniRef50_A6NJC5 Cluster: Uncharacterized protein ENSP00000369504... 34 4.7
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 34 6.2
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 33 8.2
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 183 bits (445), Expect = 7e-45
Identities = 87/99 (87%), Positives = 94/99 (94%)
Frame = +2
Query: 122 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 301
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 302 PXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
P RLFEGNALLRRLVRIGVLDE +MKLDY+LGLKI DFL
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFL 106
Score = 68.9 bits (161), Expect = 2e-10
Identities = 36/68 (52%), Positives = 41/68 (60%)
Frame = +1
Query: 439 QVFKLXWRXPSIMPEF*SRQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGR 618
QVFKL RQRHI NIPSFIVRLDS +HIDFSL+SP+ GG PGR
Sbjct: 113 QVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGR 172
Query: 619 VXRXTSXR 642
V R + +
Sbjct: 173 VKRKNAKK 180
Score = 34.7 bits (76), Expect = 3.5
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +3
Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
RRLQT + GLA SIHHAR+LI
Sbjct: 108 RRLQTQVFKLGLAKSIHHARVLI 130
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 104 bits (250), Expect = 3e-21
Identities = 54/98 (55%), Positives = 68/98 (69%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 305 XRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
R+FEG ALLR + R G+L E Q KLDYVL L + +FL
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFL 96
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 102 bits (245), Expect = 1e-20
Identities = 48/97 (49%), Positives = 67/97 (69%)
Frame = +2
Query: 128 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPX 307
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDP
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 308 RLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
RL EG ALLRRL +G+L Q KL++VL LK + L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLL 105
Score = 33.5 bits (73), Expect = 8.2
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +3
Query: 423 RRLQTPGVQAGLAXSIHHARILIPAK 500
RRLQT + G A SIHHAR+LI K
Sbjct: 107 RRLQTLVYRKGFAKSIHHARVLIRGK 132
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 81.4 bits (192), Expect = 3e-14
Identities = 44/100 (44%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 296 KDPXR-LFEG--NALLRRLVRIGVLDEKQMKLDYVLGLKI 406
+ +FE + L+ + R G+L +D VL LK+
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLG-PDADIDNVLALKV 102
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 77.4 bits (182), Expect = 5e-13
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 3/100 (3%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 296 --KDPXRL-FEGNALLRRLVRIGVLDEKQMKLDYVLGLKI 406
+ R+ + + L+ L R G+L E +D VL LK+
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSE-NADIDDVLALKV 102
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 74.9 bits (176), Expect = 3e-12
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 292
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 293 EKDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
D + +++RL R +L +K LD VL L + + L
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENIL 104
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 69.7 bits (163), Expect = 1e-10
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 296 -----KDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+D + + ++++L +G+L E KL+ VL LK+ D +
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKE-DAKLEDVLALKVDDIM 108
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 68.1 bits (159), Expect = 3e-10
Identities = 39/101 (38%), Positives = 58/101 (57%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 296 KDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+ R + LLR L RIG++ K LD VL L++ D L
Sbjct: 64 EVRER--KEPVLLRSLARIGLVG-KDASLDDVLNLQVNDLL 101
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 67.7 bits (158), Expect = 4e-10
Identities = 34/78 (43%), Positives = 51/78 (65%)
Frame = +2
Query: 128 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPX 307
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 308 RLFEGNALLRRLVRIGVL 361
+ G +LLRRL++ G+L
Sbjct: 67 PI-NGRSLLRRLMKYGIL 83
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 67.7 bits (158), Expect = 4e-10
Identities = 36/98 (36%), Positives = 55/98 (56%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 305 XRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
E L L + G+L + LD VL L + D L
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDIL 103
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 67.3 bits (157), Expect = 5e-10
Identities = 37/102 (36%), Positives = 56/102 (54%)
Frame = +2
Query: 113 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 292
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 293 EKDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
G + RL RIG+L E++ +LD VL L++ D L
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVL 98
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 65.3 bits (152), Expect = 2e-09
Identities = 33/101 (32%), Positives = 57/101 (56%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 296 KDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+ R L+++L R+G++++ LD +LGL ++L
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYL 102
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 64.5 bits (150), Expect = 4e-09
Identities = 34/53 (64%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +2
Query: 224 EVWRVKYTLARIRKAARELLTL-EEKDPXRLFEGNALLRRLVRIGVLDEKQMK 379
EVWRVK+TL +IRKA ELL L EKDP LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMK 93
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 64.1 bits (149), Expect = 5e-09
Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 7/108 (6%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-- 289
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 290 -----EEKDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
E + + +L +L+R G++ + +D +L LK + L
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGII-KADANVDDILSLKTENIL 110
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 61.7 bits (143), Expect = 3e-08
Identities = 35/101 (34%), Positives = 54/101 (53%)
Frame = +2
Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 296 KDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+ E L L R G+L ++ LD VL L + L
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESIL 102
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 60.5 bits (140), Expect = 6e-08
Identities = 24/58 (41%), Positives = 42/58 (72%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEK 298
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAK 67
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 60.5 bits (140), Expect = 6e-08
Identities = 33/96 (34%), Positives = 54/96 (56%)
Frame = +2
Query: 131 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXR 310
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--R 66
Query: 311 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+ LL LVR G + KL+ VL L + D L
Sbjct: 67 ADKEKELLDHLVRAGFI-SPNAKLEEVLDLNVEDIL 101
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 59.7 bits (138), Expect = 1e-07
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Frame = +2
Query: 146 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPXRLFE 319
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 320 GNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+L ++G +++ ++LD +L L + L
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAIL 104
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 58.4 bits (135), Expect = 3e-07
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +2
Query: 227 VWRVKYTLARIRKAARELLTLEEKDPXRLF 316
VWRVK+TLA+IRKAARELLTL+EKDP RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 54.0 bits (124), Expect = 5e-06
Identities = 33/91 (36%), Positives = 48/91 (52%)
Frame = +2
Query: 146 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGN 325
P P++K RL E +++ EYGL+NKRE+W + + R AR L + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELWIAETIARKWRAYARYLNAKQAAGQDISEEKE 70
Query: 326 ALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
L +L ++GVL E +LD VL L + D L
Sbjct: 71 RFLTKLKKLGVLSE-NAELDDVLDLTVKDVL 100
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 6e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 283
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 44.8 bits (101), Expect = 0.003
Identities = 28/96 (29%), Positives = 49/96 (51%)
Frame = +2
Query: 131 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXR 310
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHD-- 66
Query: 311 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+ ++ R+V+ G+L E L+ VL + FL
Sbjct: 67 --TSDKIIARMVKFGIL-ENGATLEKVLDITPNAFL 99
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 44.0 bits (99), Expect = 0.006
Identities = 30/96 (31%), Positives = 48/96 (50%)
Frame = -3
Query: 418 QEVXNLQTKHIIEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXERVF 239
QE+ NLQ++ II+ L F Q +N++Q++ + ITFEQ +
Sbjct: 87 QEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQLER 146
Query: 238 DAPYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 131
++ F+LV +TV + LQ V+T F R+ V L
Sbjct: 147 NSVNFSLVLQTVFTSQLQFGVQTSGFVRSLWSRVSL 182
Score = 39.9 bits (89), Expect = 0.094
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = -1
Query: 606 TSTEWRFQREVNVLARVQAHNK*WDVHNXLADTNMPL 496
++TEWR EVNVL R Q+ ++ WDV + L ++N+ L
Sbjct: 25 STTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSL 61
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 43.2 bits (97), Expect = 0.010
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 194 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRRLVRIGVLDEKQ 373
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ ++
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVIKNRK 91
Query: 374 M 376
+
Sbjct: 92 L 92
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 42.7 bits (96), Expect = 0.013
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = +1
Query: 529 NIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
NIPSFIVRL+S +HI FSL SP G RV R
Sbjct: 33 NIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKR 65
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 40.3 bits (90), Expect = 0.071
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +1
Query: 535 PSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
PSF+VR+DS + D SL SP GG PGRV +
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKK 54
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 37.9 bits (84), Expect = 0.38
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +2
Query: 182 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRRLVRIGVL 361
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 362 DEKQMKLDYVLGLKIXDFLXASS 430
+ L++ DF+ ASS
Sbjct: 90 PTRG-------SLELCDFVTASS 105
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 36.3 bits (80), Expect = 1.2
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = +2
Query: 179 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRRLVRIGV 358
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 359 LDEKQ 373
+D KQ
Sbjct: 89 IDLKQ 93
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 34.7 bits (76), Expect = 3.5
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -3
Query: 235 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 131
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
Score = 33.9 bits (74), Expect = 6.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 620 TRPGXPPXNGDFREKSMCWPESRRTINDGMF 528
TRPG PP +G+ KSMC+ S RT G F
Sbjct: 50 TRPGRPPPSGELSAKSMCFWLSVRTKKLGTF 80
>UniRef50_A6NJC5 Cluster: Uncharacterized protein ENSP00000369504;
n=2; Homo sapiens|Rep: Uncharacterized protein
ENSP00000369504 - Homo sapiens (Human)
Length = 222
Score = 34.3 bits (75), Expect = 4.7
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 504 YSCPXASCEHPIIYCAPGLWPAH*LLSEISIXWRSSWTCQ 623
+SCP A P+ + PG WP +S W +W CQ
Sbjct: 139 WSCPYAGLPLPLPWLWPGPWPYSDPAMTLSWPWPGTWPCQ 178
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 33.9 bits (74), Expect = 6.2
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 194 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRRLVRIGVLDEKQ 373
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 374 MKLD 385
LD
Sbjct: 92 ASLD 95
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.5 bits (73), Expect = 8.2
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 161 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRR 340
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D +L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,684,906
Number of Sequences: 1657284
Number of extensions: 11094125
Number of successful extensions: 24173
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24066
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 88590537959
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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