Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P18
         (957 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   161   2e-40
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   160   2e-40
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    36   0.008

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  161 bits (390), Expect = 2e-40
 Identities = 74/101 (73%), Positives = 86/101 (85%)
 Frame = +2

Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 296 KDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
           KDP RLFEGNA++RRLVR+G+LDE +MKLDYVL L+I DFL
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFL 105



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = +1

Query: 496 QRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
           QRHI       N+PSF+VRLD+ +HIDF+L SP+ GG PGR  R
Sbjct: 131 QRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKR 174



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
           RRLQT   + GLA SIHHAR+LI
Sbjct: 107 RRLQTQVFKLGLAKSIHHARVLI 129


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  160 bits (389), Expect = 2e-40
 Identities = 74/101 (73%), Positives = 86/101 (85%)
 Frame = +2

Query: 116 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 295
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 296 KDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
           KDP RLFEGNA++RRLVR+G+LDE +MKLDYVL L+I DFL
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFL 105



 Score = 59.3 bits (137), Expect = 8e-10
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = +1

Query: 496 QRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
           QRHI       N+PSF+VRLD+ +HIDF+L SP+ GG PGR  R
Sbjct: 131 QRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKR 174



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
           RRLQT   + GLA SIHHAR+LI
Sbjct: 107 RRLQTQVFKLGLAKSIHHARVLI 129


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +2

Query: 179 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRRLVRIGV 358
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N LL +L  +G+
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 359 LDEKQMKLD 385
           L  K    D
Sbjct: 88  LPSKSKMSD 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,373
Number of Sequences: 5004
Number of extensions: 43266
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)