Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P18
(957 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 134 7e-32
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 134 7e-32
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 133 2e-31
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 104 9e-23
07_03_1358 - 25984897-25984997,25985623-25985650 47 3e-05
07_03_1357 - 25982861-25983068,25983354-25983361 43 4e-04
08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931 29 5.5
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 9.6
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 134 bits (325), Expect = 7e-32
Identities = 62/98 (63%), Positives = 78/98 (79%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 305 XRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
R+FEG ALLRR+ R G+L + Q KLDYVL L + +FL
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFL 107
Score = 63.3 bits (147), Expect = 3e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +1
Query: 493 RQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
RQRHI NIPSF+VR++S +HIDFSL SPF GG PGRV R
Sbjct: 132 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKR 176
Score = 35.1 bits (77), Expect = 0.083
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
RRLQT +AG+A SIHHAR+LI
Sbjct: 109 RRLQTLVFKAGMAKSIHHARVLI 131
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 134 bits (325), Expect = 7e-32
Identities = 62/98 (63%), Positives = 78/98 (79%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 305 XRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
R+FEG ALLRR+ R G+L + Q KLDYVL L + +FL
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFL 323
Score = 63.3 bits (147), Expect = 3e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +1
Query: 493 RQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
RQRHI NIPSF+VR++S +HIDFSL SPF GG PGRV R
Sbjct: 348 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKR 392
Score = 35.1 bits (77), Expect = 0.083
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
RRLQT +AG+A SIHHAR+LI
Sbjct: 325 RRLQTLVFKAGMAKSIHHARVLI 347
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 133 bits (322), Expect = 2e-31
Identities = 62/96 (64%), Positives = 77/96 (80%)
Frame = +2
Query: 131 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXR 310
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 311 LFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
+FEG ALLRR+ R G+L + Q KLDYVL L + +FL
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFL 130
Score = 63.3 bits (147), Expect = 3e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +1
Query: 493 RQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
RQRHI NIPSF+VR++S +HIDFSL SPF GG PGRV R
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKR 199
Score = 35.1 bits (77), Expect = 0.083
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +3
Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
RRLQT +AG+A SIHHAR+LI
Sbjct: 132 RRLQTLVFKAGMAKSIHHARVLI 154
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 104 bits (250), Expect = 9e-23
Identities = 54/98 (55%), Positives = 68/98 (69%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 305 XRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
R+FEG ALLR + R G+L E Q KLDYVL L + +FL
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFL 96
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 3e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +2
Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYG 208
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 42.7 bits (96), Expect = 4e-04
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = +1
Query: 529 NIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
NIPSFIVRL+S +HI FSL SP G RV R
Sbjct: 10 NIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKR 42
>08_02_1415 + 26912260-26913075,26913208-26913366,26913521-26913931
Length = 461
Score = 29.1 bits (62), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 152 DEVSRTSLKIP-TVLCCSPSWRARTHCSPIRIRKEV 48
DE S T+ K+ V CSP RA+ C +++ KEV
Sbjct: 264 DEKSGTACKVEYQVEECSPENRAKNECIDVKVTKEV 299
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 9.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 179 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 301
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,181,347
Number of Sequences: 37544
Number of extensions: 325299
Number of successful extensions: 692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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