Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P18
         (957 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             178   5e-45
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.8  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        28   9.7  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  178 bits (434), Expect = 5e-45
 Identities = 87/99 (87%), Positives = 91/99 (91%)
 Frame = +2

Query: 122 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 301
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 302 PXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
           P RLFEGNALLRRLVRIGVLDE + KLDYVLGL+I DFL
Sbjct: 65  PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFL 103



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/63 (53%), Positives = 38/63 (60%)
 Frame = +1

Query: 439 QVFKLXWRXPSIMPEF*SRQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGR 618
           QVFKL             RQRHI       N+PSF+VRLDS +HIDFSL SP+ GG PGR
Sbjct: 110 QVFKLGLAKSIHHARVLIRQRHIRVRKQLVNVPSFVVRLDSQKHIDFSLNSPYGGGRPGR 169

Query: 619 VXR 627
           V R
Sbjct: 170 VKR 172



 Score = 34.7 bits (76), Expect = 0.11
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
           RRLQT   + GLA SIHHAR+LI
Sbjct: 105 RRLQTQVFKLGLAKSIHHARVLI 127


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 149 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   P
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGP 108


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = -1

Query: 240 LTRHTSRLLRRPYSPMIFNSWSRRAFSKGRRGVTYVFENTDGTLLFTILASSHALLADKN 61
           LTRH+S+   R   P I  S S       RR  +    N+      T+ AS+ A L+D N
Sbjct: 40  LTRHSSQPKLRRDEPSITGSLSNLTLDNSRRAASLAQLNSLKATGKTLSASNLAALSDTN 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,270,483
Number of Sequences: 59808
Number of extensions: 353721
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2812459436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)