Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P18
         (957 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   171   5e-43
AF038605-6|AAB92018.2|  247|Caenorhabditis elegans Hypothetical ...    29   4.9  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  171 bits (417), Expect = 5e-43
 Identities = 81/103 (78%), Positives = 93/103 (90%)
 Frame = +2

Query: 110 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 289
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 290 EEKDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
           E+KDP RLFEGNALLRRLV+IGVLDE +MKLDYVLGLK+ DFL
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFL 105



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 33/65 (50%), Positives = 39/65 (60%)
 Frame = +1

Query: 439 QVFKLXWRXPSIMPEF*SRQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGR 618
           QVFKL             +Q HI       ++PSFIVRLDS +HIDFSL+SP+ GG PGR
Sbjct: 112 QVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGR 171

Query: 619 VXRXT 633
           V R T
Sbjct: 172 VKRRT 176



 Score = 35.1 bits (77), Expect = 0.075
 Identities = 17/23 (73%), Positives = 18/23 (78%)
 Frame = +3

Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
           RRLQT   + GLA SIHHARILI
Sbjct: 107 RRLQTQVFKLGLAKSIHHARILI 129


>AF038605-6|AAB92018.2|  247|Caenorhabditis elegans Hypothetical
           protein C02B10.3 protein.
          Length = 247

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -2

Query: 605 PPXNGDFREKSMCWPESRRTINDGMFXXXXXXRICLCRDQNSGMMDGXRQXSLNTWRL 432
           PP +G F E+  CW   R+TI+            C+C +  SG      +  LN  +L
Sbjct: 142 PPWDGRFCERLACW---RKTISTQQHRYRNNGDHCICGNHYSGASCDVIKSCLNNGQL 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,735
Number of Sequences: 27780
Number of extensions: 263345
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)