Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P18
         (957 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   149   2e-36
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   146   1e-35
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    30   2.0  
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa...    30   2.6  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   6.0  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    28   8.0  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  149 bits (362), Expect = 2e-36
 Identities = 71/107 (66%), Positives = 86/107 (80%)
 Frame = +2

Query: 98  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 277
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 278 LLTLEEKDPXRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
           LLTL+EK+P R+FEG ALLRR+ R G+LDE Q KLDYVL L + +FL
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFL 107



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = +1

Query: 493 RQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
           RQRHI       NIPSF+VR++S +H+DFSL SPF GG PGRV R
Sbjct: 132 RQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +3

Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
           RRLQT   ++G+A SIHHAR+LI
Sbjct: 109 RRLQTIVFKSGMAKSIHHARVLI 131


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  146 bits (355), Expect = 1e-35
 Identities = 66/98 (67%), Positives = 82/98 (83%)
 Frame = +2

Query: 125 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 304
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 305 XRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIXDFL 418
            R+FEG ALLRR+ R G+LDE Q KLDYVL L + +FL
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFL 107



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 30/45 (66%), Positives = 33/45 (73%)
 Frame = +1

Query: 493 RQRHIXXXXXXXNIPSFIVRLDSGQHIDFSLKSPFXGGXPGRVXR 627
           RQRHI       NIPSF+VRLDS +HIDF+L SPF GG PGRV R
Sbjct: 132 RQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKR 176



 Score = 32.7 bits (71), Expect = 0.37
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 423 RRLQTPGVQAGLAXSIHHARILI 491
           RRLQT   ++G+A SIHH+R+LI
Sbjct: 109 RRLQTIVFKSGMAKSIHHSRVLI 131


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 606 TSTEWRFQREVNVLARVQAHN 544
           +S E RF REVN+++RVQ HN
Sbjct: 57  SSLESRFVREVNMMSRVQHHN 77


>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 159

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 46  LTSFLILIGEQCVRARQDGEQQSTVGIFKDVRDTSSSF*KGTS*PRVEDHRRV 204
           L SF++L    C+R++  G  ++T  +  D+   ++    G   P +E + R+
Sbjct: 26  LISFIMLASYICIRSKSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRI 78


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 131 KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 247
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 200 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPXRLFEGNALLRRL 343
           +YG+ NKR V  + +T   +R    E+L ++     +  E N ++ RL
Sbjct: 599 DYGMENKRLVMELSFTRENLRMKEMEVLAVQRALTFKDEEINVVMGRL 646


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,970,547
Number of Sequences: 28952
Number of extensions: 253565
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2304931176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)