Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P17
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    29   1.3  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   2.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   5.1  

>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 15  PTSLXGNSLKIFEYIGLIKYDKD 83
           PTSL G + KIF+YI  ++++ D
Sbjct: 286 PTSLGGGNKKIFQYIEPVEHEND 308


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 142 GNMTKIVNMLISIIFFSLFYACKCEYGFVLWSENKP 249
           GN TK+   +I   F +L +     YGF+ W + KP
Sbjct: 291 GNFTKLEKSIIGA-FAALVFKDIFVYGFIAWRKRKP 325


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 199 YACKCEYGFVLWSENKPTVTVTD 267
           Y C C++ FV+ +  KP+++V +
Sbjct: 118 YGCCCQFAFVISNPRKPSLSVAN 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,543
Number of Sequences: 5004
Number of extensions: 52092
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)