Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P17
         (953 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0577 - 4286048-4286186,4286600-4286660,4286957-4287089,428...    31   1.8  
05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411     28   9.5  
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917...    28   9.5  

>07_01_0577 -
           4286048-4286186,4286600-4286660,4286957-4287089,
           4287286-4287350,4288346-4288451,4288529-4288750,
           4289619-4289852,4289948-4290037,4290605-4291507
          Length = 650

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 286 DVYVAKATYTNEINNTGWAFLELHTSRDS 372
           D    K+   N + N G+AFLEL TSRD+
Sbjct: 345 DSVTLKSDSNNPVCNRGFAFLELETSRDA 373


>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
          Length = 220

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 333 CIIYFVGVSCFRYVYIGYISVIVSHGYS 250
           CII+  G+SCF +V+ G+++V   H +S
Sbjct: 193 CIIHLFGLSCF-FVFDGFLTVKKYHIFS 219


>03_02_0955 -
           12690405-12690842,12690940-12691130,12691208-12691718,
           12692240-12693171,12693260-12693351,12693430-12693509,
           12693568-12693621,12693734-12693850,12693949-12694194,
           12694273-12694432,12694512-12694576,12694686-12694877,
           12694980-12695061,12695153-12695925
          Length = 1310

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 411 RIPHKRSDMDALAKCSERVLFLYINKCITILLF 509
           R+  K+ D D L KCS+R     +N+C ++L F
Sbjct: 743 RVCVKQCDADNLEKCSQRPTQSKLNQCHSLLSF 775


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,782,721
Number of Sequences: 37544
Number of extensions: 285921
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)