Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P17
(953 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76) 40 0.004
SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0) 31 1.8
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 31 1.8
SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05) 31 1.8
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
>SB_43321| Best HMM Match : Laminin_A (HMM E-Value=0.76)
Length = 353
Score = 39.5 bits (88), Expect = 0.004
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +1
Query: 295 VAKATYTNEINNTGWAFLEL--HTSRDSTDEKQA-YSAGFLEGFLTRDLIWMHWQNVLKG 465
VA Y + IN TGWA L++ T + D+ Y+AG+LEG LT I ++NV G
Sbjct: 46 VAYGLYQDNINTTGWAVLDVVSGTGVEPVDDVALMYAAGYLEGALTARHINYQYENVF-G 104
Query: 466 YYF 474
+F
Sbjct: 105 IFF 107
>SB_53875| Best HMM Match : Glu_synthase (HMM E-Value=0)
Length = 911
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 420 HKRSDMDALAKCSERVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
H + D + ++LF Y + LLF KQ F +LF FKQ F
Sbjct: 70 HPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 118
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 420 HKRSDMDALAKCSERVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
H + D + ++LF Y + LLF KQ F +LF FKQ F
Sbjct: 861 HPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 909
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 887 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 921
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 899 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 933
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 911 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 945
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 923 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 957
>SB_29489| Best HMM Match : Glu_syn_central (HMM E-Value=1.1e-05)
Length = 180
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +3
Query: 420 HKRSDMDALAKCSERVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
H + D + ++LF Y + LLF KQ F +LF FKQ F
Sbjct: 70 HPQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 118
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 96 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 130
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 108 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 142
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 120 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 154
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 132 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 166
Score = 29.9 bits (64), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 462 RVLFLYINKCITILLFH*IKQPFVDILFQSFKQRF 566
++LF Y + LLF KQ F +LF FKQ F
Sbjct: 144 QLLFDYFKQLFAQLLFDYFKQLFAQLLFDYFKQLF 178
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 390 LFSWFSGRIPHKRSDMDALAKCSERVLFLYINKCI 494
L + GRI +R+D AL ++ L LY +KC+
Sbjct: 528 LLDYLRGRIRVERNDTSALRNANQEFLELYKSKCL 562
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 28.7 bits (61), Expect = 7.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 211 CEYGFVLWSENKPTVTVTDYYADI 282
C Y ++ W KP V V ++ DI
Sbjct: 536 CHYNYLPWGNEKPVVVVESFWEDI 559
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,148,252
Number of Sequences: 59808
Number of extensions: 366595
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2800542235
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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