Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P16
         (953 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   189   6e-49
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    28   2.2  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  189 bits (460), Expect = 6e-49
 Identities = 98/189 (51%), Positives = 124/189 (65%)
 Frame = +3

Query: 189 FLFTSESVGEGHPDKMCDQISXAILDXHLNQDPDAKVACETITKTGMVLLCGEITSKANV 368
           FLFTSESVGEGHPDK+CDQIS AILD  L  DP +KVACET +KTGMV++ GEIT+++ +
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQI 64

Query: 369 DYQKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQVQILLRVCILTXXK*I*GLEIRA* 548
           DYQKV+R T+K IGYDDS KGFD++T N+LVAIE+Q   + +           G   +  
Sbjct: 65  DYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYEKALEELGAGDQGI 124

Query: 549 CSVMQPDETEECMPLTXXLAHKLNXKIAELTRNGEFWXXRPHSKTQVTCQYVFAGGAXSP 728
                 DET E +PLT  LAHKLN  ++   R+G     RP +KTQVT +Y    GA  P
Sbjct: 125 MFGYATDETPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIP 184

Query: 729 XXVHTVXLS 755
             V T+ +S
Sbjct: 185 RRVDTIVVS 193



 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 17/30 (56%), Positives = 26/30 (86%)
 Frame = +2

Query: 476 SPNIAEGVYLDRXXIDIGAGDQGLMFGYAT 565
           SP+IA+G++ ++   ++GAGDQG+MFGYAT
Sbjct: 101 SPDIAQGLHYEKALEELGAGDQGIMFGYAT 130


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 689 YLPICICWWCTXP 727
           YLPIC+ WW + P
Sbjct: 100 YLPICLVWWYSKP 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,373
Number of Sequences: 5004
Number of extensions: 60398
Number of successful extensions: 152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)