Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P16
(953 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 168 6e-42
01_02_0051 - 10655867-10657057 166 2e-41
01_03_0090 - 12347165-12348349 165 3e-41
10_06_0022 - 9716537-9716649,9716709-9716826,9716958-9717076,971... 29 5.5
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 28 9.5
>05_01_0264 + 2030080-2031270
Length = 396
Score = 168 bits (408), Expect = 6e-42
Identities = 92/191 (48%), Positives = 118/191 (61%), Gaps = 2/191 (1%)
Frame = +3
Query: 189 FLFTSESVGEGHPDKMCDQISXAILDXHLNQDPDAKVACETITKTGMVLLCGEITSKANV 368
FLFTSESV EGHPDK+CDQ+S A+LD L +DPD+KVACET TKT MV++ GEIT+KANV
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNMVMVFGEITTKANV 66
Query: 369 DYQKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQVQILLRVC--ILTXXK*I*GLEIR 542
DY+K+VRET ++IG+ + G D +LV IE+Q + + T G +
Sbjct: 67 DYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 126
Query: 543 A*CSVMQPDETEECMPLTXXLAHKLNXKIAELTRNGEFWXXRPHSKTQVTCQYVFAGGAX 722
DET E MPL+ LA KL ++ E+ +NG RP KTQVT +Y GA
Sbjct: 127 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGAR 186
Query: 723 SPXXVHTVXLS 755
P VHTV +S
Sbjct: 187 VPVRVHTVLIS 197
Score = 38.7 bits (86), Expect = 0.007
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 476 SPNIAEGVY--LDRXXIDIGAGDQGLMFGYAT 565
SP+IA+GV+ + +IGAGDQG MFGYAT
Sbjct: 103 SPDIAQGVHGHFTKRPEEIGAGDQGHMFGYAT 134
>01_02_0051 - 10655867-10657057
Length = 396
Score = 166 bits (404), Expect = 2e-41
Identities = 92/197 (46%), Positives = 119/197 (60%), Gaps = 2/197 (1%)
Frame = +3
Query: 171 MEDGSVFLFTSESVGEGHPDKMCDQISXAILDXHLNQDPDAKVACETITKTGMVLLCGEI 350
M + FLFTSESV EGHPDK+CDQIS A+LD L +DP++KVACET TKT MV++ GEI
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEI 60
Query: 351 TSKANVDYQKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQVQILLRVC--ILTXXK*I 524
T+KANVDY+K+VR+T + IG+ + G D +LV IE+Q + + T
Sbjct: 61 TTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEE 120
Query: 525 *GLEIRA*CSVMQPDETEECMPLTXXLAHKLNXKIAELTRNGEFWXXRPHSKTQVTCQYV 704
G + DET E MPL+ LA KL ++ E+ +NG RP KTQVT +Y
Sbjct: 121 IGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQ 180
Query: 705 FAGGAXSPXXVHTVXLS 755
GA P VHTV +S
Sbjct: 181 NDNGAMVPLRVHTVLIS 197
Score = 38.7 bits (86), Expect = 0.007
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 476 SPNIAEGVY--LDRXXIDIGAGDQGLMFGYAT 565
SP+IA+GV+ + +IGAGDQG MFGYAT
Sbjct: 103 SPDIAQGVHGHFTKRPEEIGAGDQGHMFGYAT 134
>01_03_0090 - 12347165-12348349
Length = 394
Score = 165 bits (402), Expect = 3e-41
Identities = 91/191 (47%), Positives = 116/191 (60%), Gaps = 2/191 (1%)
Frame = +3
Query: 189 FLFTSESVGEGHPDKMCDQISXAILDXHLNQDPDAKVACETITKTGMVLLCGEITSKANV 368
FLFTSESV EGHPDK+CDQ+S A+LD L QDPD+KVACET TKT MV++ GEIT+KA V
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 369 DYQKVVRETVKHIGYDDSSKGFDWRTLNLLVAIEEQVQILLRVC--ILTXXK*I*GLEIR 542
DY+K+VR+T + IG+ G D +LV IE+Q + + T G +
Sbjct: 66 DYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGAGDQ 125
Query: 543 A*CSVMQPDETEECMPLTXXLAHKLNXKIAELTRNGEFWXXRPHSKTQVTCQYVFAGGAX 722
DET E MPL+ LA KL ++ E+ +NG RP KTQVT +Y+ GA
Sbjct: 126 GHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAM 185
Query: 723 SPXXVHTVXLS 755
P VHTV +S
Sbjct: 186 VPVRVHTVLIS 196
Score = 38.7 bits (86), Expect = 0.007
Identities = 19/32 (59%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Frame = +2
Query: 476 SPNIAEGVY--LDRXXIDIGAGDQGLMFGYAT 565
SP+IA+GV+ + +IGAGDQG MFGYAT
Sbjct: 102 SPDIAQGVHGHFTKRPEEIGAGDQGHMFGYAT 133
>10_06_0022 -
9716537-9716649,9716709-9716826,9716958-9717076,
9717238-9717476,9717793-9717849,9717933-9718019,
9718185-9718729,9718836-9719102
Length = 514
Score = 29.1 bits (62), Expect = 5.5
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +3
Query: 297 VACETITKTGMVLLCGEITSKANVDYQKVVRET--VKHIGYDDSSKGFDWRTLN 452
+ C +I+K GM+L IT + D+ K VR+ KH GY KG +++ N
Sbjct: 444 LVCGSISKVGMLLF---ITLRT--DWGKEVRKPSPYKHFGYHGKRKGLQFKSSN 492
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 28.3 bits (60), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 399 KHIGYDDSSKGFDWRT-LNLLVAIEEQVQIL 488
KH+ + S GFDWRT N++ I + + L
Sbjct: 386 KHLDKESESDGFDWRTRYNIIKVISQGLNYL 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,896,188
Number of Sequences: 37544
Number of extensions: 422791
Number of successful extensions: 763
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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