Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P15
(949 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.14
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.72
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.96
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 8.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 829 PPXXPTRRXHXHPPLSNXXXXPXXPPPXP 915
PP P+RR PP+ N PPP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Score = 29.5 bits (63), Expect = 0.72
Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = +3
Query: 828 PP--PXXNPPXTPPPXPLXPXXXPPXXPSXXXXPXXP 932
PP P PP PP P+ PP PS P P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Frame = +3
Query: 816 GXXAPPPXXNPPXTP--PPXPLXPXXXPPXXPSXXXXPXXP 932
G A PP PP P PP P PP P+ P P
Sbjct: 442 GAPAAPPL--PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Frame = +3
Query: 813 AGXXAPPPXXNPPXTPP-PXPLXPXXXPPXXP 905
A + PP PP PP P P PP P
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP 440
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.72
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +3
Query: 834 PXXNPPXTPPPXPLXPXXXPPXXP 905
P NPP PPP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 846 PPXTPPPXPLXPXXXPPXXPSXXXXP 923
PP PPP P P PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 828 PPPXXNPPXTPPPXP 872
PPP PP PPP P
Sbjct: 14 PPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 831 PPXXNPPXTPPPXPLXPXXXPPXXP 905
PP PP PPP P PP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.96
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -1
Query: 931 GXXGXXXXEGXXGGXXXGXRGXG-GGVXGGLXXGGGA 824
G G G GG G RG G GG GG GGA
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGA 53
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 828 PPPXXNPPXTPPPXPLXPXXXPPXXPSXXXXPXXP 932
PP PP + PP P P PP P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 825 APPPXXNPPXTPPPXPLXPXXXPPXXPSXXXXPXXP 932
A PP + P TPPP P+ P P P P
Sbjct: 1697 AAPPQMSAP-TPPPPPMSVPPPPSAPPMPAGPPSAP 1731
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +1
Query: 772 AXASPPHXXXPNXARGXXRPPXXPTRRXHXHPPL-SNXXXXPXXPPPXPT 918
A A+PP P + RPP R PP ++ P PP P+
Sbjct: 120 ASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS 169
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 825 APPPXXNPPXTPPPXPLXPXXXPPXXPSXXXXPXXP 932
APP PP +P P P PP PS P P
Sbjct: 143 APPRPSIPPPSPASAPPIPSKAPP-IPSSLPPPAQP 177
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +3
Query: 828 PPPXXNPPXTPPPXPLXPXXXPPXXP 905
P P P PPP P+ PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPP 767
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,567
Number of Sequences: 5004
Number of extensions: 18298
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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