Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P14
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.19 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.33 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   0.53 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.0  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   5.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 20/75 (26%), Positives = 22/75 (29%)
 Frame = +2

Query: 749 PPPPPPXHQXNXXXXXXXXXXXXXXXNQXXPPXXXXXXXXXXXXXXXRPXPPXHKQXXPP 928
           PPPPPP  + N                   PP                P PP  +   PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI-------PLPPQGRSAPPP 363

Query: 929 XPPPPXXGGGRXPXP 973
            PP      GR P P
Sbjct: 364 PPPRSAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 923 PPXPPPPXXGGGRXPXPP 976
           PP PPP     G  P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPP 355


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +2

Query: 899 PPXHKQXXPPXPPPPXXGGGRXPXPP 976
           PP      PP PPPP    G  P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 30.3 bits (65), Expect = 0.43
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPPXXGGGRXPXPP 976
           P P       PP PPPP   G   P PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 0.76
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 508 PPPXGXGGXXXXPXPPXPPTKKXG 579
           PPP G  G    P PP PP    G
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPPXXGGGRXPXPP 976
           P  P      PP PPP   G G  P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.0 bits (52), Expect(2) = 1.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPP 943
           P PP      PP PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 22.2 bits (45), Expect(2) = 1.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 923 PPXPPPPXXGGG 958
           PP PPPP    G
Sbjct: 777 PPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.0 bits (47), Expect(3) = 0.53
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 740 PXXPPPPPP 766
           P  PPPPPP
Sbjct: 21  PSQPPPPPP 29



 Score = 21.8 bits (44), Expect(3) = 0.53
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 728 PXXXPXXPPPPP 763
           P   P  PPPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 21.4 bits (43), Expect(3) = 0.53
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 749 PPPPPPXH 772
           PPPPPP +
Sbjct: 25  PPPPPPGY 32


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 750  PPPPPQXTXKTXPPXHXXGXAPPP 821
            PPPPP    K  PP      A PP
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPP 1906


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPP--XXGGGRXPXPP 976
           P PP H +     PPPP     G   P PP
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 250



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPP--XXGGGRXPXPP 976
           P PP H +     PPPP     G   P PP
Sbjct: 247 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPP--XXGGGRXPXPP 976
           P PP H +     PPPP     G   P PP
Sbjct: 273 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPP--XXGGGRXPXPP 976
           P PP H +     PPPP     G   P PP
Sbjct: 299 PPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
 Frame = +2

Query: 893 PXPPXHKQXXPPXPPPP--XXGGGRXPXPP 976
           P PP H +     PPPP     G   P PP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHHEPGEHMPPPP 237


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 893  PXPPXHKQXXPPXPPPPXXGGGRXPXPP 976
            P PP      PP  PP   G    P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.144    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,255
Number of Sequences: 5004
Number of extensions: 23904
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)