Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P13
         (937 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.56 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   7.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   9.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +2

Query: 650 HHQRTPHQNRGTEPHH-CGHH 709
           HH    H +RG+ PHH  G+H
Sbjct: 321 HHPSQYHPHRGSSPHHQHGNH 341


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +2

Query: 608 GEDHHLQDMREARDHHQRTPHQNRG--TEPHHCGHHFPQAAS 727
           G  HH   M     H   TPH +      PHH  H  P A S
Sbjct: 413 GPHHHT--MGHGHSHIHATPHHHHSHAATPHH-QHSTPLAHS 451


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 541 SALALVLVSWS-ICSWKSITISWFFFLSRW 455
           S  ALV+ SW+   SW+ IT ++F+F  R+
Sbjct: 195 SGYALVVYSWAKNDSWR-ITHNFFYFDPRY 223


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 569 SLRAVGPSRERDQGEDHHLQDMREARDHHQRTPHQNRG 682
           S R    SRER+Q    + ++ RE R+  +      RG
Sbjct: 283 SRRRYSRSREREQKSYKNEREYREYRETSRERSRDRRG 320


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 486 VIDFQEQIDQLTKTKARAEKEKSKFQAEVYELLAQVE 596
           V+D +  +    +++    KE+ K + ++YE + QV+
Sbjct: 344 VMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVD 380


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 486 VIDFQEQIDQLTKTKARAEKEKSKFQAEVYELLAQVE 596
           V+D +  +    +++    KE+ K + ++YE + QV+
Sbjct: 259 VMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVD 295


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +3

Query: 486 VIDFQEQIDQLTKTKARAEKEKSKFQAEVYELLAQVE 596
           V+D +  +    +++    KE+ K + ++YE + QV+
Sbjct: 578 VMDCKVGVRTYLESELAKAKERPKLRKDMYEKMVQVD 614


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 299 CLLSFNPLTQLSFGFQIILDETNLVLQPGEST 204
           CL+S+NPL Q     + + ++   +L+ G +T
Sbjct: 429 CLISWNPLMQPKQPIK-LFEQWKSILESGTTT 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,112
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)