Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P12
         (972 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.81 
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)                   31   1.1  
SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         31   1.9  
SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)                   30   3.3  
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)                   29   5.7  
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                29   5.7  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.5  
SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)               29   7.5  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_2993| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_6362| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 31.9 bits (69), Expect = 0.81
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 555  PPTDPITPRPETLPMNQGLRLA-EP*TALPSGPRATWTARP 674
            PPT P TP+P T      L LA EP   LP  P    T RP
Sbjct: 894  PPTTPTTPKPTTPAPPPPLPLAPEPPPPLPPPPPPIQTTRP 934


>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
          Length = 515

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 28/102 (27%), Positives = 46/102 (45%)
 Frame = +3

Query: 369 STNEDLSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPD 548
           ST+   SC  +DG +G   +Y +  +  NT   DG      +V    C  + DV  L   
Sbjct: 220 STSSTNSCPNTDGVKGG--SYQVRESCPNT---DGVQGGSYQVNE--CIRFNDVIFLCKS 272

Query: 549 QRPPTDPITPRPETLPMNQGLRLAEP*TALPSGPRATWTARP 674
           Q PP+    P      +NQ    A+  ++ P+ P+A  +++P
Sbjct: 273 QGPPSPSAGPTKPPRSVNQS---ADATSSTPTMPQAGSSSKP 311


>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = +3

Query: 417 ECVNYYLCNAANNTIITDGTNVIDIRVGSGPCSSYIDV--CCLAPDQRPPTDPITPRPET 590
           +C++  LCN+    I  D +N         P S  +D   C   PD  PP    TP P  
Sbjct: 694 QCIDNSLCNS----IAGDVSNRQSRDEEKAPLSPDVDKMQCFSPPDSLPPLPKFTPSPTG 749

Query: 591 LPMNQGLRLAEP*TALPSGP 650
            P   G+      +   SGP
Sbjct: 750 YPCRTGVNQGVESSGNVSGP 769


>SB_8135| Best HMM Match : GBP_PSP (HMM E-Value=0.64)
          Length = 225

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 246 TGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLV 359
           TG +   +NQ+ T+ +P T  +PV +  + D  P+ L+
Sbjct: 118 TGMVPYTVNQVMTTGRPRTTTRPVQRQDLPDSDPAPLL 155


>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
          Length = 631

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 543 PDQRPPT-DPITPRPETLPMNQGLRLAEP*TALPSGPRATWTA 668
           P+  PP  + + P+PET+P   G    EP +  P  P+   +A
Sbjct: 154 PETVPPQPETVPPQPETVPPQPGSEEPEPVSQAPEPPKPKTSA 196


>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = +2

Query: 494 SRQWPVFIVHRRLLSGSRPETANRSHHAQAGDPANEPGAAAGGTLNGVAFRTTGDVDGET 673
           SR  PV++   R+L  + PE    +  A    P +  G   G     +AF  T ++D ++
Sbjct: 590 SRWLPVYVADMRMLPSTAPEV--HAEFASGNHPVSRSGHPFGQVWTDMAFEQTINLDSKS 647


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 494 SRQWPVFIVHRRLLSGSRPETANRSHHAQAGDPANEPGAAAGGTLNGVAFRTTGDVDGET 673
           SR  PV++   R+L  + PE    +  A    P +  G   G     +A   T ++D ++
Sbjct: 775 SRWLPVYVADMRMLPSTAPEV--HAEFASGNHPVSRSGHPFGQVWTDMALEQTINLDSKS 832

Query: 674 KFG 682
           + G
Sbjct: 833 RGG 835


>SB_51035| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
          Length = 321

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 471 GTNVIDIRVGSGPCSSYIDVCCLAPDQRPPTDPITPRPETLP 596
           G N   +     P   Y+ V    P  +PP  P TP+P   P
Sbjct: 195 GMNPSQLAQSVVPAPQYVHVPPATPTPKPPPTPKTPKPGAAP 236


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 195  KLLLIGFLAAACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 344
            K + +G + +  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 1024 KFVSVGRMRSLFSQ-ADTKVLQAACNQLITSKKAPTRSQILRQIRSDERA 1072


>SB_2993| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 537 LAPDQRPPTDPITPRPETLPMNQGLRLAEP*TALPSGPRAT 659
           L P QRPPT     +P + P N   R  +P   LP  P ++
Sbjct: 8   LPPFQRPPTPSNELQPISTPFNHFYRAPDPFDDLPPLPMSS 48


>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 291  KPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGECVNYYLC 440
            KP    +P T+PS   + PS  V   S ++    +   GQ G+    + C
Sbjct: 945  KPSPDSKPATKPSTDSKTPSAAVASNSDSKACPVECMTGQCGKSCPAHCC 994


>SB_15232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +3

Query: 195 KLLLIGFLAAACAQNMDTGDLESIINQIFTSAKPPTQLQPVTQPSVADRA 344
           K + +G + +  +Q  DT  L++  NQ+ TS K PT+ Q + Q    +RA
Sbjct: 58  KFVSVGRMRSLFSQ-ADTEVLQAACNQLITSKKAPTRSQILRQIRSDERA 106


>SB_6362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 40  DFLSLVCDTRLGPDLADLVAYKENLKTCYFTKSIAS 147
           DF+  +  +  G +L D + + + L T YF KS  S
Sbjct: 220 DFVPYLSPSNYGFELTDFIGFDQTLPTLYFYKSSTS 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,356,954
Number of Sequences: 59808
Number of extensions: 493987
Number of successful extensions: 1550
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2872045441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)