Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P12
         (972 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-2|ABD63218.1|  150|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z31590-2|CAD27604.1|  538|Caenorhabditis elegans Hypothetical pr...    24   4.4  
AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical...    29   5.0  
Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>U23170-2|ABD63218.1|  150|Caenorhabditis elegans Hypothetical
           protein F58F12.4 protein.
          Length = 150

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +3

Query: 243 DTGDLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGEC 422
           ++ DL + IN+   S    +Q++  TQ   +   PST +P     +DL C + +     C
Sbjct: 26  ESSDLANFINET-DSEMTSSQIESSTQIPSSTMNPSTKLPSSMRGKDLHCPSIENAVSSC 84

Query: 423 ------VNYYLCNAAN 452
                 V Y  C  AN
Sbjct: 85  PKDSKWVYYTCCGGAN 100


>Z31590-2|CAD27604.1|  538|Caenorhabditis elegans Hypothetical
           protein R01H10.3b protein.
          Length = 538

 Score = 24.2 bits (50), Expect(2) = 4.4
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 459 IITDGTNVIDIRVG--SGPCSSYIDVCCLAPDQRPPTDPITPRPETLPMN 602
           ++ D   ++ +R    S P SS      + P +    DP+ P+   +P N
Sbjct: 449 VVDDDMGIVTMREAPPSRPASSRASRTEIPPKEESKVDPMKPKQAHVPQN 498



 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 258 ESIINQIFTSAKPPTQLQPVTQPSVADR 341
           ES+  Q + S +PP+  QP  +PS + R
Sbjct: 419 ESVPTQSY-SERPPSSQQPSPRPSASPR 445


>AL023828-22|CAA19467.2|  272|Caenorhabditis elegans Hypothetical
           protein Y17G7B.19 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 438 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCLAPDQRP 557
           C +  ++I + G    ++ +  GPCS++ID C   PD+ P
Sbjct: 101 CYSKKSSICSTGGTPFEVELSDGPCSNHID-C--NPDELP 137


>Z81470-1|CAB03881.1|  321|Caenorhabditis elegans Hypothetical
           protein C14A6.1 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 198 LLLIGFLAAACAQNMDTGDL-ESIINQIFTSAKPPTQ 305
           LLL G L AA AQN +TG +  S  N+ +     P Q
Sbjct: 6   LLLFGLLGAATAQNCNTGGIYNSQFNRCYQYFTAPAQ 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,951
Number of Sequences: 27780
Number of extensions: 346554
Number of successful extensions: 1136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)