Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P12
         (972 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa...    30   2.0  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    29   3.5  
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    29   4.7  
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi...    28   8.1  

>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase I (GI:10444261) and II (GI:10444263)
           [Arabidopsis thaliana];  contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 529

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 271 LMIDSRSPVSMFCA--HAAARKPMSRSLYIFGYYSQNITLTISNSQCSS*SNR 119
           L+++   P + + A    A  KP   S+Y    YS + T T S+S C S  +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
 Frame = +3

Query: 231 AQNMDTGDLESIINQIFTSA---KPPTQLQP-VTQPSVADRAPSTLVPGVSTNEDLSCQT 398
           A ++D G+LES  ++  + +        + P ++  S  D AP+  +P VST+E +    
Sbjct: 376 ALSVDKGNLESAKSESSSESVLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEPM---- 431

Query: 399 SDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGS--GPCSS 518
            +G+  ECVN      A+   + +G +++  RV    G CSS
Sbjct: 432 YEGE--ECVNTVPPVCADKEPVYEGESLLGKRVEKDVGDCSS 471


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 255 LESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNEDLSCQTSDGQEGE 419
           +E+ I  I     PP  L PVT    A ++PS+L P +S       Q  D +  E
Sbjct: 220 IETTIPSIILPPPPPGPLSPVT---TAQKSPSSLPPSLSLQRSSEQQDLDTKREE 271


>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 576

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 578 GRDGICWRSLVGSQTADVDVR*TRATADSYID 483
           G DG+ WR+L+G+ +A  D++  +  A   I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,502,326
Number of Sequences: 28952
Number of extensions: 323231
Number of successful extensions: 982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2353558416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)