Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P09
(934 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.044
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.076
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.94
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.94
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 2.2
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.6
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 8.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.044
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Frame = +2
Query: 701 PXPPSRXGXPX---GPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPPLXPP 844
P PP P P P PPP + P PP P PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.076
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = +2
Query: 707 PPSRXGXPXGPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPPLXPP 844
PP P P PPP + P P P+ P PP PP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 696 PXPXPPPVXXXPXALXPXPP 755
P P PPP P A P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 0.94
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +2
Query: 707 PPSRXGXPXGPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPPLXPPT 847
PP G P PPP P PP + P PP P+
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.94
Identities = 16/52 (30%), Positives = 19/52 (36%)
Frame = +2
Query: 692 TTXPXPPSRXGXPXGPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPPLXPPT 847
+T P P S G P P P P P P PA PP+ P+
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG-IPPVPKPS 1098
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 701 PXPPSRXGXPXGPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPPLXPP 844
P P G P P P P P PP + A PTP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Frame = +2
Query: 692 TTXPXPPSRXGXPX--GPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPPL 835
+T P P P P P PPP V P P P+ P PPL
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS--APPPPL 1735
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 701 PXPPSRXGXPXGPXPXPPPXXVXXXXRXTPXP 796
P PPS P GP PPP P P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 701 PXPPSRXGXPXGPXPXPPPXXVXXXXRXTP 790
P PP P P P PPP V TP
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +2
Query: 701 PXPPSRXGXPXGPXPXPPPXXVXXXXRXTPXPPHTPAXXXPTPP 832
P PP R PP V +P PH P+ P PP
Sbjct: 121 PLPPKRVSLGIPSISNPP---VDTVISDSPTSPHPPSFVQPHPP 161
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 97 SRHDNDTLMSLDKPQLECSEKNALFVKF 180
SR+DND+ DK +E S KN +++F
Sbjct: 77 SRNDNDSEGIRDKGGVEISNKNDPYIQF 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,984
Number of Sequences: 5004
Number of extensions: 41436
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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