Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P08
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   1.2  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    28   1.6  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.8  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   6.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/51 (31%), Positives = 16/51 (31%)
 Frame = +2

Query: 758 PXXPXPXNPXXTPXPLXXPXXPPXPPXXXXXXXPXPPXXXXXXXXPXXXPP 910
           P  P P     TP P   P  PP P        P PP        P   PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +1

Query: 115 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESXGXGSII 270
           ++ A+AG+    LS +  N+D+  K+    L G Y +A      ++  G GS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 262 SIIQNVVNXLIIDXRRNXMEYCYKLWVGNGXEIVRKYFPLNFR--THHGRKLCQDHLQK 432
           +II   V+  I+D   +  ++C ++W G   + +R ++   ++  +H   K    H+++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRR 305


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 240 FQALTDSTVVVAGEDAVVQFLLEVLV 163
           F  +T   V+V  EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 163 NQDLEEKLYNSILTGDYDSAVRQSLE 240
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 128 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 238
           AR SLNY ++   + SRRN    ++P      S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 579 HNTKYNQYLKMSTTTCNCNXRDRVVYGGXSA 671
           +++ YN+   M T++C+C+   +  YGG  A
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLA 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,630
Number of Sequences: 5004
Number of extensions: 48922
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)