Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P06
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    63   6e-11
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.0  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   6.9  
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          26   6.9  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = +3

Query: 600 REISWRDFVNLYLNKGVVEXLXVINXKWVRVQLQGXALXGK-VIWFALGSVDSFERNLXN 776
           +EI+W+DF   +L+KG+VE L V+N   VRV L+G    G    +F++GS+DSF+R L +
Sbjct: 157 QEITWQDFRQQFLDKGLVERLVVVNRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLED 216

Query: 777 AQIXMSXDPP*F 812
           AQ  +   P  F
Sbjct: 217 AQRQLGIPPSEF 228


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 RVAVRKTLKLRKKMQVLHLKVPRLHRNRPLHHQINGT 449
           RV+ +K LK    M  LH+  P+ H NR L  Q+  T
Sbjct: 467 RVSYQKLLKSHV-MNKLHMAHPKSHTNRSLLRQLKNT 502


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 327 NTSNRVAV--RKTLKLRKKMQVLHLKVPRLHRNRPLHHQING 446
           N++NRV +  +K  +L       H K+ + HRNR  H+  NG
Sbjct: 289 NSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNG 330


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 601 LYLNSKYATEGKQCHNTNCSKHHP 530
           + L+S+    GK+C   +C K HP
Sbjct: 210 MVLSSEMCASGKECKAADCVKGHP 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,930,874
Number of Sequences: 5004
Number of extensions: 49280
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)