Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P06
         (962 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739...    30   2.4  
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780...    30   2.4  
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258...    29   5.5  
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     29   7.3  

>05_05_0098 +
           22373384-22373522,22373566-22373772,22373879-22373953,
           22374611-22374744,22375189-22375674,22375854-22376621,
           22377367-22377594,22378294-22378773
          Length = 838

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 729 WFALGSVDSFERNLXNAQIXMSXDP 803
           +F +GSVDSFE  L  AQ  +  DP
Sbjct: 250 YFNIGSVDSFEEKLEEAQEALGVDP 274


>01_06_1310 -
           36176008-36176472,36176547-36176774,36177313-36178080,
           36178250-36178732,36179883-36180010,36180539-36180607,
           36180688-36180892,36181005-36181067
          Length = 802

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 729 WFALGSVDSFERNLXNAQIXMSXDP 803
           +F +GSVDSFE  L  AQ  +  DP
Sbjct: 219 YFNIGSVDSFEEKLQEAQKALEIDP 243


>11_06_0031 +
           19425011-19425113,19425552-19425637,19425732-19425829,
           19425950-19426067,19426200-19426289,19426770-19427074,
           19427162-19427357,19427435-19427617,19427713-19427982,
           19428906-19429151,19429633-19429704,19430087-19430104
          Length = 594

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 249 GCNLCPLKCIFDSCECVNL 193
           GC +C  KC FD+ E +NL
Sbjct: 57  GCGICVKKCPFDAIEIINL 75


>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 542 GAIGIVTLLAF-SCVF*IKIQRDKLERFCQFVFKQRCGR 655
           G+IG+VTL+   +C + I+ +R+KL    Q  F+Q  GR
Sbjct: 388 GSIGVVTLVTIVTCAYLIQ-ERNKLHSIKQKYFRQHGGR 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,782
Number of Sequences: 37544
Number of extensions: 312587
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)