Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P06
         (962 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y18314-1|CAB48398.1|  797|Homo sapiens paraplegin-like protein p...    71   5e-12
BC065016-1|AAH65016.1|  797|Homo sapiens AFG3 ATPase family gene...    71   5e-12
BC024282-1|AAH24282.1|  812|Homo sapiens Similar to AFG3 ATPase ...    71   5e-12
BC045753-1|AAH45753.1|  125|Homo sapiens AFG3L1 protein protein.       40   0.014
AK097044-1|BAC04933.1|  199|Homo sapiens protein ( Homo sapiens ...    40   0.014

>Y18314-1|CAB48398.1|  797|Homo sapiens paraplegin-like protein
           protein.
          Length = 797

 Score = 71.3 bits (167), Expect = 5e-12
 Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
 Frame = +3

Query: 600 REISWRDFVNLYLNKGVVEXLXVINXKWVRVQLQ--GXALXGKVIWFALGSVDSFERNLX 773
           REI+W+DFVN YL+KGVV+ L V+N ++VRV        + G+ +WF +GSVD+FERNL 
Sbjct: 168 REITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLE 227

Query: 774 NAQ 782
             Q
Sbjct: 228 TLQ 230



 Score = 36.7 bits (81), Expect = 0.13
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 LDSVLRQWYEFCKKPPKGFEKYFQPG-SGQKDAKTQE 373
           L  ++  +  FC +PPKGF KYF  G +G+K ++ +E
Sbjct: 55  LTDIIAAYQRFCSRPPKGFGKYFPNGKNGKKASEPKE 91


>BC065016-1|AAH65016.1|  797|Homo sapiens AFG3 ATPase family gene
           3-like 2 (yeast) protein.
          Length = 797

 Score = 71.3 bits (167), Expect = 5e-12
 Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
 Frame = +3

Query: 600 REISWRDFVNLYLNKGVVEXLXVINXKWVRVQLQ--GXALXGKVIWFALGSVDSFERNLX 773
           REI+W+DFVN YL+KGVV+ L V+N ++VRV        + G+ +WF +GSVD+FERNL 
Sbjct: 168 REITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLE 227

Query: 774 NAQ 782
             Q
Sbjct: 228 TLQ 230



 Score = 39.5 bits (88), Expect = 0.018
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 LDSVLRQWYEFCKKPPKGFEKYFQPG-SGQKDAKTQE 373
           L  ++  +  FC +PPKGFEKYF  G +G+K ++ +E
Sbjct: 55  LTDIIAAYQRFCSRPPKGFEKYFPNGKNGKKASEPKE 91


>BC024282-1|AAH24282.1|  812|Homo sapiens Similar to AFG3 ATPase
           family gene 3-like 2 (yeast) protein.
          Length = 812

 Score = 71.3 bits (167), Expect = 5e-12
 Identities = 33/63 (52%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
 Frame = +3

Query: 600 REISWRDFVNLYLNKGVVEXLXVINXKWVRVQLQ--GXALXGKVIWFALGSVDSFERNLX 773
           REI+W+DFVN YL+KGVV+ L V+N ++VRV        + G+ +WF +GSVD+FERNL 
Sbjct: 183 REITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGSVDTFERNLE 242

Query: 774 NAQ 782
             Q
Sbjct: 243 TLQ 245



 Score = 39.5 bits (88), Expect = 0.018
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 266 LDSVLRQWYEFCKKPPKGFEKYFQPG-SGQKDAKTQE 373
           L  ++  +  FC +PPKGFEKYF  G +G+K ++ +E
Sbjct: 70  LTDIIAAYQRFCSRPPKGFEKYFPNGKNGKKASEPKE 106


>BC045753-1|AAH45753.1|  125|Homo sapiens AFG3L1 protein protein.
          Length = 125

 Score = 39.9 bits (89), Expect = 0.014
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 582 YFELRYREISWRDFVNLYLNKGVVEXLXVINXKWVRV 692
           YF    REI+W+ FV  YL +G+V+ L V+N + VRV
Sbjct: 54  YFRDPGREITWKHFVQYYLARGLVDRLEVVNKQSVRV 90


>AK097044-1|BAC04933.1|  199|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39725 fis, clone SMINT2015294, highly similar to
           Mus musculus ATP-dependent zinc metalloprotease (Afg3l1)
           mRNA. ).
          Length = 199

 Score = 39.9 bits (89), Expect = 0.014
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 582 YFELRYREISWRDFVNLYLNKGVVEXLXVINXKWVRV 692
           YF    REI+W+ FV  YL +G+V+ L V+N + VRV
Sbjct: 54  YFRDPGREITWKHFVQYYLARGLVDRLEVVNKQSVRV 90


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,714,547
Number of Sequences: 237096
Number of extensions: 1694700
Number of successful extensions: 2818
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12769697060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)