Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P05
         (965 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi...    46   3e-05
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi...    46   3e-05
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil...    46   3e-05
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil...    33   0.38 
At5g37110.1 68418.m04454 hypothetical protein                          29   4.6  

>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +3

Query: 534 LEIQFPLRRDSGDYXMILGYRAQHSTHRTPTXGGIRFSTDVTRDXVKALSALMT 695
           ++++  + +D G     +G+R QH   R P  GGIR+  +V  D V AL+ LMT
Sbjct: 35  IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMT 88



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 697 FKCACVXVPFGGATAGIRSIPKNXPSHDLEKITRRF 804
           +K A   +P+GGA  GI   P      +LE++TR F
Sbjct: 89  WKTAVAKIPYGGAKGGIGCDPSKLSISELERLTRVF 124


>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
           to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
           thaliana] SWISS-PROT:Q38946
          Length = 411

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +3

Query: 534 LEIQFPLRRDSGDYXMILGYRAQHSTHRTPTXGGIRFSTDVTRDXVKALSALMT 695
           ++++  + +D G     +G+R QH   R P  GGIR+  +V  D V AL+ LMT
Sbjct: 35  IKVECTIPKDDGTLVSYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMT 88



 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 697 FKCACVXVPFGGATAGIRSIPKNXPSHDLEKITRRF 804
           +K A   +P+GGA  GI   P++    +LE++TR F
Sbjct: 89  WKTAVADIPYGGAKGGIGCSPRDLSLSELERLTRVF 124


>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
           to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
           thaliana] SWISS-PROT:Q43314
          Length = 411

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +3

Query: 534 LEIQFPLRRDSGDYXMILGYRAQHSTHRTPTXGGIRFSTDVTRDXVKALSALMT 695
           ++++  + +D G     +G+R QH   R P  GGIR+  +V  D V AL+ LMT
Sbjct: 35  IKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMT 88



 Score = 31.9 bits (69), Expect = 0.66
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 697 FKCACVXVPFGGATAGIRSIPKNXPSHDLEKITRRF 804
           +K A   +P+GGA  GI   P      +LE++TR F
Sbjct: 89  WKTAVAKIPYGGAKGGIGCDPSELSLSELERLTRVF 124


>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
           to NADP-specific glutatamate dehydrogenase (NADP-GDH)
           SP:P28724 [Giardia lamblia (Giardia intestinalis)]
          Length = 637

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 507 KLMEPCDHILEIQFPLRRDSGDYXMILGYRAQHSTHRTPTXGGIRFSTDVTRDXVKALSA 686
           +L+EP + ++  + P   D G+  +  G+R Q +    P  GGIRF   +     K L  
Sbjct: 238 RLLEP-ERMIVFRVPWIDDRGETHVNRGFRVQFNQALGPCRGGIRFHPSMNLSIAKFLGF 296

Query: 687 LMTLQ 701
             TL+
Sbjct: 297 QQTLK 301


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 330 SHEIPDKLKDIPTSANPKFFHMV-EYFFHRACQVVEDK--LVEDLKSRTPIEEKKKXVAG 500
           S EIPDKLKD      P+ F ++ E   H  C VV  K   +E+ K RT    +KK    
Sbjct: 532 SAEIPDKLKD------PELFEVIKESMVHGPCGVVNPKCPCMENGKRRTDDFVEKKDFKC 585

Query: 501 ILKLMEPCDHILEIQF 548
             + + P +  L +++
Sbjct: 586 DNRYVIPYNRSLSLRY 601


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,182
Number of Sequences: 28952
Number of extensions: 363971
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2334107520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)