Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P04
         (1037 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   8.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.9  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 802 PFXPPPXPPXCXPL 843
           P  P P PP C P+
Sbjct: 23  PHSPEPYPPRCPPI 36


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 829 GGGXEGGXRGXXXDDGG 779
           GGG  GG  G   D GG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
            neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 999  SPTPPXXPSPXP 1034
            SPT P  PSP P
Sbjct: 94   SPTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,800
Number of Sequences: 336
Number of extensions: 2094
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29588839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)