Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P04
         (1037 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   8.4  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/56 (26%), Positives = 19/56 (33%)
 Frame = +1

Query: 673 PPNPNLXTQXMXPXXPSTQRXXXDRXLXXPXXPXFXPRHXTXXPFXPPPXPPXCXP 840
           PP P +  Q      P        R +     P + P+     P  PPP PP   P
Sbjct: 194 PPPPAVEDQAADANEPDDY-YSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPP 248


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 961  PXPPHXGAXXXXXPPPPXPP 1020
            P PP  G      PPPP PP
Sbjct: 763  PPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 961  PXPPHXGAXXXXXPPPPXPPXP 1026
            P PP         PPPP PP P
Sbjct: 762  PPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 961  PXPPHXGAXXXXXPPPPXPP 1020
            P PP  G      PPPP PP
Sbjct: 11   PPPPPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 23.0 bits (47), Expect(2) = 8.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1000 PPPPXPPXP 1026
            PPPP PP P
Sbjct: 945  PPPPPPPPP 953



 Score = 21.0 bits (42), Expect(2) = 8.4
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +1

Query: 979  GAXXXXXPPPPXPP 1020
            G      PPPP PP
Sbjct: 939  GVMPAFPPPPPPPP 952


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,631
Number of Sequences: 5004
Number of extensions: 29268
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 543234592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)