Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P04
(1037 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 27 0.29
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 0.49
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.66
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 1.1
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 1.5
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 30 2.7
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 30 2.7
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 4.7
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 29 6.2
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 0.87
Identities = 21/91 (23%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Frame = +1
Query: 760 PXXPXFXPRHXTXXPFXPPPXPPXCXP--LPHXRXGXXXXXXXXXXXXXXXXXXXXXXXX 933
P P P + P+ PPP PP P P+
Sbjct: 93 PYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPP 152
Query: 934 XXXXXXXXXPXPPHXGAXXXXXPPPPXPPXP 1026
P PP+ PPPP PP P
Sbjct: 153 NPPYPPPLYPPPPNPPPPNAPYPPPPYPPPP 183
Score = 30.7 bits (66), Expect = 2.0
Identities = 21/89 (23%), Positives = 25/89 (28%)
Frame = +1
Query: 760 PXXPXFXPRHXTXXPFXPPPXPPXCXPLPHXRXGXXXXXXXXXXXXXXXXXXXXXXXXXX 939
P P + P P+ PPP PP P P+
Sbjct: 111 PPNPPYPP--PPNAPYPPPPNPPYPPP-PNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNP 167
Query: 940 XXXXXXXPXPPHXGAXXXXXPPPPXPPXP 1026
P PP+ PPPP PP P
Sbjct: 168 PPPNAPYPPPPYPPPPNPPYPPPPNPPYP 196
Score = 28.3 bits (60), Expect(2) = 0.19
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP+ PPPP PP P
Sbjct: 191 PNPPYPPPPNAPNPPPPNPPYP 212
Score = 26.2 bits (55), Expect(2) = 0.92
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP A PPPP P P
Sbjct: 210 PYPPPPNAPNPPYPPPPNAPNP 231
Score = 24.6 bits (51), Expect(2) = 0.19
Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Frame = +1
Query: 673 PPNPNLXTQXMXPXXPSTQRXXXDRXLXXPXXPXFXPRHXTXXP---FXPPPXPPXCXP 840
PPNP P PS P + P P + PPP PP P
Sbjct: 127 PPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNP 185
Score = 24.2 bits (50), Expect(2) = 0.92
Identities = 14/56 (25%), Positives = 15/56 (26%)
Frame = +1
Query: 673 PPNPNLXTQXMXPXXPSTQRXXXDRXLXXPXXPXFXPRHXTXXPFXPPPXPPXCXP 840
PPN P P P P P+ PPP PP P
Sbjct: 135 PPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPP 190
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 27.1 bits (57), Expect(2) = 0.29
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP PPPP PP P
Sbjct: 727 PPPPSPQPGCAGLPPPPPPPPP 748
Score = 25.0 bits (52), Expect(2) = 0.29
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 802 PFXPPPXPPXCXPLP 846
P PPP PP C LP
Sbjct: 712 PPPPPPPPPGCAGLP 726
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 27.9 bits (59), Expect(2) = 0.49
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP + PPPP PP P
Sbjct: 1165 PPPPSSPSPPPPPPPPPPPPTP 1186
Score = 23.4 bits (48), Expect(2) = 0.49
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 775 FXPRHXTXXPFXPPPXPPXCXPLP 846
F R P PPP PP P P
Sbjct: 1150 FSVRDQIPPPPPPPPPPPPSSPSP 1173
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 32.3 bits (70), Expect = 0.66
Identities = 19/72 (26%), Positives = 19/72 (26%)
Frame = +1
Query: 811 PPPXPPXCXPLPHXRXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXPPHXGAXX 990
PPP P PLP G P PP G
Sbjct: 922 PPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSA 981
Query: 991 XXXPPPPXPPXP 1026
PPPP PP P
Sbjct: 982 PPPPPPPPPPPP 993
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 953 PXXPXHXTRAPXXPPXPHPPXXPXPXP 1033
P P T+ P PP P P P P P
Sbjct: 195 PTSPSQITQPPPPPPRPPPSPPPPPPP 221
Score = 27.9 bits (59), Expect(2) = 1.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP PPPP PP P
Sbjct: 219 PPPPSPSPPRPPPPPPPSPPRP 240
Score = 27.5 bits (58), Expect(2) = 3.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP + PPPP PP P
Sbjct: 216 PPPPPPPSPSPPRPPPPPPPSP 237
Score = 22.2 bits (45), Expect(2) = 1.1
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 781 PRHXTXXPFXPPPXPPXCXPLP 846
P T P PPP PP P P
Sbjct: 198 PSQITQPP-PPPPRPPPSPPPP 218
Score = 21.0 bits (42), Expect(2) = 3.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 802 PFXPPPXPPXCXPLP 846
P PPP PP P P
Sbjct: 208 PPRPPPSPPPPPPPP 222
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 953 PXXPXHXTRAPXXPPXPHPPXXPXPXP 1033
P P + P PP P PP P P P
Sbjct: 386 PPSPPPPPQPPPPPPPPPPPPPPPPPP 412
Score = 26.6 bits (56), Expect(2) = 1.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP PPPP PP P
Sbjct: 411 PPPPPPPPAPPPPPPPPPPPPP 432
Score = 23.0 bits (47), Expect(2) = 1.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +1
Query: 760 PXXPXFXPRHXTXXPFXPPPXPPXCXPLP 846
P P P P PPP PP P P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPP 393
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 30.3 bits (65), Expect = 2.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP G PPPP PP P
Sbjct: 663 PPPPPPGGQAGGAPPPPPPPLP 684
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 30.3 bits (65), Expect = 2.7
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPPXP 1026
P PP G PPPP PP P
Sbjct: 188 PPPPSGGPPPPPPPPPPPPPPP 209
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 29.5 bits (63), Expect = 4.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 961 PXPPHXGAXXXXXPPPPXPP 1020
P PP GA PPPP PP
Sbjct: 306 PPPPPGGAPPPPPPPPPPPP 325
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 829 GGGXEGGXRGXXXDDGGRXXGXXGXRGXG 743
GGG +GG G D GG G G G G
Sbjct: 771 GGGGDGGDGGGGGDGGGGGGGGGGGGGGG 799
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,293,358
Number of Sequences: 59808
Number of extensions: 263232
Number of successful extensions: 2054
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3106636966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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