Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P03
         (992 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   7.2  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/57 (26%), Positives = 17/57 (29%)
 Frame = +2

Query: 770 PPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPXAXP 940
           PP P   +   PP          PP P P         P        P P PP + P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
 Frame = +1

Query: 733 PHPXXXPTLGVLSSPPXXXVFXXPPXS--PXVXXXXNPPLSXP 855
           P P   P+ G +SSPP        P S  P +     PPL  P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
 Frame = +2

Query: 755 PSXFCPPXPXXXSSPTPPX--PXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXP 925
           PS   P      S+P PP   P       +PP+  P+      + P   +    PLP P
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 770 PPXPXXXSSPTPPXPXXXXXXXTPPSPXP 856
           PP P     P PP P        PP P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
 Frame = +2

Query: 713  PWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXXXXXLFP-- 886
            P   P +       P+   PP P    +P  P P        PPS  P         P  
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229

Query: 887  RXXTXXXXPLPXPPXAXP 940
               T    P+P P    P
Sbjct: 1230 PVPTAKAPPVPAPSSEAP 1247



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/63 (25%), Positives = 17/63 (26%)
 Frame = +2

Query: 752  PPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPX 931
            P     PP P   S+P  P          PP P P         P        P   PP 
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094

Query: 932  AXP 940
              P
Sbjct: 1095 PKP 1097



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/77 (24%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
 Frame = +2

Query: 713  PWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRX 892
            P   P         PS   PP P    +P  P P         PS  P         P  
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152

Query: 893  XT-XXXXPLPXPPXAXP 940
                   P+P P  A P
Sbjct: 1153 PAPSGAPPVPKPSVAAP 1169



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/66 (28%), Positives = 21/66 (31%)
 Frame = +2

Query: 755  PSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPXA 934
            PS   PP P    +P  P P        PP P P         P        P+P P  A
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKP----SVAAPPVPAPSSGIPPVPKP---AAGVPPVPPPSEA 1197

Query: 935  XPKXXP 952
             P   P
Sbjct: 1198 PPVPKP 1203


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 884 GRXXXXXXFGGXERGGFXXXXTXGXXGG 801
           GR      FGG  RGGF      G  GG
Sbjct: 146 GRGGSRGGFGGNSRGGFGGGSRGGFGGG 173


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 503 GSWPFX-GLLLTCSFLRYRLILW 438
           G W    GLL TCSF   R+ LW
Sbjct: 285 GDWRHTDGLLATCSFYDKRVCLW 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,380
Number of Sequences: 5004
Number of extensions: 45067
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)