Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P03
(992 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 37 0.026
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 35 0.10
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 32 0.73
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.73
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 30 2.9
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 3.9
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.9
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 3.9
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 3.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 6.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 9.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 9.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 9.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 9.0
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 36.7 bits (81), Expect = 0.026
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Frame = +2
Query: 701 PFXXPWXXPHTPTXXXXPPSX--FCPPXPXXXSSPTPPXPXXXXXXXTPPSPXP 856
P P P TP PP PP P TPP P TPPSP P
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIP 192
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.10
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +2
Query: 689 PXXLPFXXPWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXP 856
P P P P P P + FCPP P P PP P PP P P
Sbjct: 40 PCAAPMPMPMPMPVCPPPPPCP-AQFCPPPPI---CPPPPPPPMPCPPPPPPMPRP 91
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 31.9 bits (69), Expect = 0.73
Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Frame = +2
Query: 689 PXXLPFXXPWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXX 868
P +PF P + P F P P P P P P P P
Sbjct: 84 PKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKP-KPFPKPMLFPKPMPIPKPMPFP 142
Query: 869 XXXLFPRXXTXXXXPLPXP-PXAXPKXXP 952
LFP+ P P P P + PK P
Sbjct: 143 KPMLFPK-----PMPFPKPMPKSKPKSEP 166
Score = 30.3 bits (65), Expect = 2.2
Identities = 26/101 (25%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Frame = +2
Query: 689 PXXLPFXXPWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXX 868
P +PF P P P F P P P P P P P P+
Sbjct: 104 PNPMPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPF-PKPMLFPKPMPFPKPMPKSKP 162
Query: 869 XXXLFPRXXTXXXXPLPXP---PXAXPKXXPXXLLXXXLXP 982
FP P+P P P PK P L P
Sbjct: 163 KSEPFPN-PMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFP 202
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/92 (22%), Positives = 25/92 (27%)
Frame = +2
Query: 689 PXXLPFXXPWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXX 868
P +PF P P P P P P P P P P P+
Sbjct: 208 PKPMPFPKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMP-FPKPMPKPKPKPKPMPKPKP 266
Query: 869 XXXLFPRXXTXXXXPLPXPPXAXPKXXPXXLL 964
L P+ P PK P +L
Sbjct: 267 KLKLKPKPMPFPKPKPKLKPKTKPKKNPVPIL 298
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Frame = +2
Query: 734 PTXXXXPPSXFCPP--XPXXXSSPTPPXPXXXXXXXTPPSPXP 856
P PP CPP P P PP P PP P P
Sbjct: 40 PPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 713 PWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSP 850
P P P PP CPP P PP P PP P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPP 72
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/55 (30%), Positives = 18/55 (32%)
Frame = +2
Query: 686 CPXXLPFXXPWXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSP 850
CP P P P P PP PP P P PP P P+P
Sbjct: 45 CPPP-PICPPQFCPPPPMCPPPPP----PPPPPMCPPPPPPMPSYSPCQSYAPAP 94
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 31.1 bits (67), Expect = 1.3
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -3
Query: 939 GXAXGGXGXGXXXXVXXRGKXXXXXXXWGXGEGGVXXXXNXXGXGGVGEDXXXGXGGQNX 760
G GG G G WG GG G GG G G GG+
Sbjct: 54 GWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGG 113
Query: 759 EGGXXXXVGVXGXXHG 712
GG G G G
Sbjct: 114 GGGGGGGRGGGGGGRG 129
Score = 30.3 bits (65), Expect = 2.2
Identities = 23/81 (28%), Positives = 24/81 (29%)
Frame = -3
Query: 927 GGXGXGXXXXVXXRGKXXXXXXXWGXGEGGVXXXXNXXGXGGVGEDXXXGXGGQNXEGGX 748
GG G G G WG GG N G G G G GG GG
Sbjct: 49 GGGGPGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNG-GGGRGGGGGGGGGRGGG 107
Query: 747 XXXVGVXGXXHGXXKGXKXGQ 685
G G G G G+
Sbjct: 108 GGGRGGGGGGGGGRGGGGGGR 128
Score = 29.9 bits (64), Expect = 2.9
Identities = 24/85 (28%), Positives = 25/85 (29%)
Frame = -3
Query: 942 FGXAXGGXGXGXXXXVXXRGKXXXXXXXWGXGEGGVXXXXNXXGXGGVGEDXXXGXGGQN 763
FG GG G WG G GG N G G G + G GG
Sbjct: 36 FGGRSGGWGRPGWGGGGPGWGRGGGGSGWGGGRGG--GWGNNGGGGNWGGNGGGGNGGGG 93
Query: 762 XEGGXXXXVGVXGXXHGXXKGXKXG 688
GG G G G G G
Sbjct: 94 RGGGGGGGGGRGGGGGGRGGGGGGG 118
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +3
Query: 732 PPPXXXPHPRXSVLPXXXXCLXXPPXXPXGXXXXKPPPLXXPKXXXXXXSSXAXXPXXPX 911
PPP P+ L PP P G PPP P+ ++ P P
Sbjct: 106 PPPPPTGEPQD--LSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPK 163
Query: 912 XSPXPP 929
+ PP
Sbjct: 164 GTGSPP 169
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +3
Query: 732 PPPXXXPHPRXSVLPXXXXCLXXPPXXPXGXXXXKPPPLXXPKXXXXXXSSXAXXPXXPX 911
PPP P+ L PP P G PPP P+ ++ P P
Sbjct: 137 PPPPPTGEPQD--LSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPK 194
Query: 912 XSPXPP 929
+ PP
Sbjct: 195 GTGTPP 200
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +3
Query: 732 PPPXXXPHPRXSVLPXXXXCLXXPPXXPXGXXXXKPPPLXXPKXXXXXXSSXAXXPXXPX 911
PPP P+ L PP P G PPP P+ ++ P P
Sbjct: 199 PPPPPTGEPQD--LSAEGYASRRPPPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPK 256
Query: 912 XSPXPP 929
+ PP
Sbjct: 257 GTGSPP 262
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/66 (24%), Positives = 22/66 (33%)
Frame = +3
Query: 732 PPPXXXPHPRXSVLPXXXXCLXXPPXXPXGXXXXKPPPLXXPKXXXXXXSSXAXXPXXPX 911
PPP P+ + PP P G PPP P+ ++ P P
Sbjct: 74 PPPPPTGEPQ-DLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPK 132
Query: 912 XSPXPP 929
+ PP
Sbjct: 133 GTGSPP 138
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/66 (25%), Positives = 21/66 (31%)
Frame = +3
Query: 732 PPPXXXPHPRXSVLPXXXXCLXXPPXXPXGXXXXKPPPLXXPKXXXXXXSSXAXXPXXPX 911
PPP P L PP P G PPP P+ ++ P P
Sbjct: 232 PPPTGEPQD----LSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPK 287
Query: 912 XSPXPP 929
+ PP
Sbjct: 288 GTGTPP 293
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Frame = +3
Query: 732 PPPXXXPHPRXSVLPXXXXCLXXPPXXPXGXXXXKPPPLXXPKXXXXXXSSXAXXPXXP- 908
PPP P+ L PP P G PPP P+ + P P
Sbjct: 168 PPPPPTGEPQD--LSTEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPPPPK 225
Query: 909 -XXSPXPP 929
SP PP
Sbjct: 226 GTGSPTPP 233
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Frame = -2
Query: 928 GGXGEXXGXXGXXAXEEXXXXXXLGXXRGGGXXXXXPXGXXGGXXR--XXXXXGRTEXRG 755
GG G G G G +GGG G GG R GR G
Sbjct: 209 GGWGGQGGSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGGGWGGWGRGSRWG 268
Query: 754 WGXXXGGGMXXG 719
WG GG G
Sbjct: 269 WGRPSWGGWGRG 280
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/84 (25%), Positives = 24/84 (28%)
Frame = -3
Query: 951 GXXFGXAXGGXGXGXXXXVXXRGKXXXXXXXWGXGEGGVXXXXNXXGXGGVGEDXXXGXG 772
G G GG G G G WG +GG + G D G G
Sbjct: 76 GGSGGAGAGGSGSGSGGWGGQDG--GSSAGGWGGSQGGSQGGSSGGWGGSSRSDSGSGQG 133
Query: 771 GQNXEGGXXXXVGVXGXXHGXXKG 700
G + G G G G G
Sbjct: 134 GWGGQQGGNSNAGGWGGSQGGQNG 157
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Frame = -3
Query: 858 WGXGEGGVXXXXNXXGXGGVG-----ED--XXXGXGGQN--XEGGXXXXVGVXGXXHGXX 706
WG +GG G GG G +D G GGQN +GG G G G
Sbjct: 148 WGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRGGNQGGE 207
Query: 705 KGXKXGQ 685
+G GQ
Sbjct: 208 QGGWGGQ 214
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.5 bits (63), Expect = 3.9
Identities = 28/87 (32%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Frame = +2
Query: 725 PHTPTXXXXPPSXFCPP--------XPXXXSS--PTPPXPXXXXXXXTP-PSPXPQXXXX 871
P TPT PP PP P S+ PT P P P PSP PQ
Sbjct: 433 PKTPTRVAPPPPPSAPPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEV 492
Query: 872 XXLFPRXXTXXXXPLPXPPXAXPKXXP 952
P P P PP A P P
Sbjct: 493 SKSPP-------PPPPLPPIATPSSVP 512
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.9
Identities = 27/98 (27%), Positives = 27/98 (27%)
Frame = -3
Query: 981 GXRXXXXRXXGXXFGXAXGGXGXGXXXXVXXRGKXXXXXXXWGXGEGGVXXXXNXXGXGG 802
G R G GG G G G WG G GG G GG
Sbjct: 37 GNRWGGGGGPGGWGNNGGGGWGRGGGRGGGDWGGNNGGGGNWG-GNGGGRGDWGGNGGGG 95
Query: 801 VGEDXXXGXGGQNXEGGXXXXVGVXGXXHGXXKGXKXG 688
G GG N GG G G G G G
Sbjct: 96 RGGGGRGDWGGNNNGGGGNW--GGGGNNDGGWGGNNGG 131
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +2
Query: 770 PPXPXXXS-SPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPXAXPKX 946
PP P + S PP P PP+P L P+ P P P A P
Sbjct: 310 PPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVP-PTPKSAVPSE 368
Query: 947 XP 952
P
Sbjct: 369 AP 370
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +2
Query: 770 PPXPXXXS-SPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPXAXPKX 946
PP P + S PP P PP+P L P+ P P P A P
Sbjct: 260 PPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVP-PTPKSAVPSE 318
Query: 947 XP 952
P
Sbjct: 319 AP 320
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +2
Query: 770 PPXPXXXS-SPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPXAXPKX 946
PP P + S PP P PP+P L P+ P P P A P
Sbjct: 310 PPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVP-PTPKSAVPSE 368
Query: 947 XP 952
P
Sbjct: 369 AP 370
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +2
Query: 770 PPXPXXXS-SPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXPLPXPPXAXPKX 946
PP P + S PP P PP+P L P+ P P P A P
Sbjct: 310 PPTPKSAAPSEVPPTPKSAAPSEVPPTPKSAAPSEVPLTPKSAAQSSVP-PTPKSAVPSE 368
Query: 947 XP 952
P
Sbjct: 369 AP 370
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 752 PPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQ 859
PPS F P P P PP P PP P P+
Sbjct: 321 PPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPPPR 354
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 752 PPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQ 859
PPS F P P P PP P PP P P+
Sbjct: 331 PPSRFGP--PGMGGMPPPPPPGMRYPGGMPPPPPPR 364
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/65 (24%), Positives = 19/65 (29%)
Frame = +2
Query: 734 PTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXPQXXXXXXLFPRXXTXXXXP 913
P PP PP + P PP PP P + FP
Sbjct: 721 PPGVGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPFGRGAGPMSSFPPPPRGGMHH 780
Query: 914 LPXPP 928
+P PP
Sbjct: 781 MPPPP 785
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 725 PHTPTXXXXPP-SXFCPPXPXXXSSPTPPXPXXXXXXXTPPSP 850
P PT PP + PP P S P PP P + P P
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 725 PHTPTXXXXPP-SXFCPPXPXXXSSPTPPXPXXXXXXXTPPSP 850
P PT PP + PP P S P PP P + P P
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = +2
Query: 725 PHTPTXXXXPP-SXFCPPXPXXXSSPTPPXPXXXXXXXTPPSP 850
P PT PP + PP P S P PP P + P P
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 734 PTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXP 856
P PP PP P P PP P PP P P
Sbjct: 752 PPISGGPPPP--PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 734 PTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXP 856
P PP PP P P PP P PP P P
Sbjct: 752 PPISGGPPPP--PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 734 PTXXXXPPSXFCPPXPXXXSSPTPPXPXXXXXXXTPPSPXP 856
P PP PP P P PP P PP P P
Sbjct: 335 PPISGGPPPP--PPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 9.0
Identities = 25/93 (26%), Positives = 27/93 (29%)
Frame = +2
Query: 536 TPPPP*RASQKSTLXSXVAXPDRTIKIPAVSPWKLXXXXXXXXXXXYRNTCPXXLPFXXP 715
TPPPP K S P R PA P N +P P
Sbjct: 510 TPPPPAPGPHKEQRRSTSKDPPR----PAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPP 565
Query: 716 WXXPHTPTXXXXPPSXFCPPXPXXXSSPTPPXP 814
P + PP PP P P PP P
Sbjct: 566 PPLPQNLSGAPPPPP---PPPPMLGGPPPPPPP 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,156
Number of Sequences: 27780
Number of extensions: 306770
Number of successful extensions: 1312
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2594635024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -