Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P02
(943 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 97 4e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 94 2e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 92 9e-20
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.9
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.8
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 3.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 5.1
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 8.8
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 8.8
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 8.8
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 96.7 bits (230), Expect = 4e-21
Identities = 40/69 (57%), Positives = 60/69 (86%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 303 KLSSMPVGG 329
KL+++P GG
Sbjct: 61 KLATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 94.3 bits (224), Expect = 2e-20
Identities = 40/69 (57%), Positives = 60/69 (86%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 303 KLSSMPVGG 329
KLS++P G
Sbjct: 61 KLSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 92.3 bits (219), Expect = 9e-20
Identities = 38/69 (55%), Positives = 60/69 (86%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 303 KLSSMPVGG 329
KL+++P GG
Sbjct: 61 KLATVPSGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 2.9
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 259 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 131
SSV T LS S S+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 3.8
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -1
Query: 331 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 164
PPP SFS I+ ++ +P SS T + SP S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 163 PPS 155
P S
Sbjct: 246 PTS 248
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 274 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 140
+ L + S T +S S S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.6 bits (56), Expect = 5.1
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 120 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 281
K+R + + L ++T + E+ + G+E+ G+K K ++ E NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 6.7
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -1
Query: 274 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 131
T LP ++V T SFS SAS T +++ +V PPST+ T
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 289 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 146
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 8.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +1
Query: 118 KKCVTWPRIYWLCWV 162
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 8.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 118 KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 264
KK + + +I W WV R +P S PS S L SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,830
Number of Sequences: 5004
Number of extensions: 29582
Number of successful extensions: 106
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -