Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P02
(943 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B) 86 3e-17
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B) 86 3e-17
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B) 86 3e-17
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)... 83 3e-16
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)... 83 3e-16
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A) 83 3e-16
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)... 72 5e-13
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)... 69 5e-12
At3g63200.1 68416.m07100 patatin-related low similarity to patat... 31 1.5
At4g29880.1 68417.m04252 leucine-rich repeat family protein cont... 30 2.6
At1g67140.1 68414.m07638 expressed protein 29 5.9
>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 303 KLSSMPVGGG 332
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 303 KLSSMPVGGG 332
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
Length = 115
Score = 86.2 bits (204), Expect = 3e-17
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ VAAYLLAVL GK +P +AD++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 303 KLSSMPVGGG 332
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.0 bits (196), Expect = 3e-16
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ AA+LLAVLGG P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 303 KLSSMPVGGG 332
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
acidic ribosomal protein P2, maize, PIR:S54179
Length = 111
Score = 83.0 bits (196), Expect = 3e-16
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ AA+LLAVLGG P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1 MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60
Query: 303 KLSSMPVGGG 332
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
Length = 115
Score = 82.6 bits (195), Expect = 3e-16
Identities = 37/70 (52%), Positives = 53/70 (75%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ VAA+LLAVL GK +P D++ IL SVG E + +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1 MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60
Query: 303 KLSSMPVGGG 332
KL+S+P GGG
Sbjct: 61 KLASVPSGGG 70
>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
acidic ribosomal protein P2, Parthenium
argentatum,SWISSPROT:RLA2_PARAR
Length = 114
Score = 72.1 bits (169), Expect = 5e-13
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ VAAYLLA L G P+ AD++KI+ SVG E D EK+ + + +DV +LIA GRE
Sbjct: 1 MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60
Query: 303 KLSSMPVGGG 332
K++++ GGG
Sbjct: 61 KMAALSSGGG 70
>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
similar to acidic ribosomal protein P2b (rpp2b)
GB:U62753 GI:2431770 from [Zea mays]
Length = 115
Score = 68.9 bits (161), Expect = 5e-12
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +3
Query: 123 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 302
M+ +AA+LLA LGG P + D++KIL SVG E D K+ + + + DV +LIAAGRE
Sbjct: 1 MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60
Query: 303 KLSSMPVGG 329
K+S++ GG
Sbjct: 61 KMSALSSGG 69
>At3g63200.1 68416.m07100 patatin-related low similarity to
patatin-like latex protein allergen Hev b 7 - Hevea
brasiliensis, EMBL:AF113546; contains patatin domain
PF01734
Length = 384
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKLSSMP 320
E++L G+E +K+++TE NG+ +E +L+A+G+ L P
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSLPPSP 371
>At4g29880.1 68417.m04252 leucine-rich repeat family protein
contains leucine rich repeats, Pfam:PF00560
Length = 404
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -3
Query: 341 CRCSASYWH*RQLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVSGSWRGLA 162
C+ S H +++ S +L N++A+++ +K L S +LNVSG++
Sbjct: 79 CKLDLSNNHIKKIPESLTARLLNLIALDIHSNQIKALPNSIGCLSKLKILNVSGNFLVSL 138
Query: 161 TQHSQ*IRGHVTHFLSPN 108
Q Q R H + PN
Sbjct: 139 PQTIQNCRFHTSTKSGPN 156
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -3
Query: 308 QLLTSGRNKLFNILAVELSDYFLKLLTVSFDTDGAEDLLNVS 183
Q L++GR L+++L L++L+ SF D + D+L VS
Sbjct: 1403 QSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVS 1444
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,932,548
Number of Sequences: 28952
Number of extensions: 173754
Number of successful extensions: 415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2256303936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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