Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P01
         (877 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   1.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   1.8  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   7.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   7.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.6  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +2

Query: 80  YHFFLLIINIIQ*VPNKFLAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVA 232
           Y +  LI   IQ  P K L      + + ++F +  QN+  ++  ++ +++
Sbjct: 143 YSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLS 193


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +2

Query: 80  YHFFLLIINIIQ*VPNKFLAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDV- 256
           Y +  LI+  I+  P K L      + +   F Y  +NK  ++  ++  +++      V 
Sbjct: 86  YSYNALIMMAIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIRHNLSLNKCFVKVP 145

Query: 257 KYRADCIRMVHWMQDKLKE---VGATT 328
           ++  D  +  +WM D   E   +G TT
Sbjct: 146 RHYDDPGKGNYWMLDPSAEDVFIGGTT 172


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 274 HPYGSLDARQIEGSRSHYRVKGCWLSNNRW 363
           HPY S     + G+  H  +K   +++N W
Sbjct: 160 HPYESWPFNTMSGATHHGGIKSDSVTSNAW 189


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 284 PYGCNPHDISH 252
           P G NPHDI++
Sbjct: 749 PVGTNPHDINN 759


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 284 PYGCNPHDISH 252
           P G NPHDI++
Sbjct: 641 PVGTNPHDINN 651


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -3

Query: 323 WLRLPSICLASSEPYGCNP 267
           W+ +  IC+++  P  C+P
Sbjct: 478 WMPVMRICVSAWNPKDCDP 496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,750
Number of Sequences: 336
Number of extensions: 4208
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)