Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P01
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    30   2.1  
06_03_0054 - 16038103-16038251,16038256-16038619                       29   3.7  
01_07_0309 - 42655890-42656001,42656241-42656332,42656493-426565...    29   3.7  
01_06_1740 - 39575614-39576981                                         29   4.9  
04_04_1261 - 32186769-32186909,32188493-32188612,32188742-32189065     29   6.5  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    28   8.5  
03_02_0310 + 7315185-7316820,7318332-7318879                           28   8.5  

>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 417 KKIQFVSMVIWMYNLALKSDGWETEPFELV---ERNEKLYGRGSTDDKGPV 560
           + I FV M   M  +    D W+ +PF L    E  +KL GRG+TD  G V
Sbjct: 91  RAISFVGM--HMDVVPANPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139


>06_03_0054 - 16038103-16038251,16038256-16038619
          Length = 170

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 206 KQLLKEAVAIPSVSCDVKYRADCIRMV-HWMQDKLKEVGATTELRDVGFQTID 361
           K +L     +P+    VK   +C   + HW+Q+K K+ G  T    +G Q  D
Sbjct: 11  KDILDNKRPLPTTKV-VKLTEECSNAILHWLQEKKKDPGCPTITCSIGRQHFD 62


>01_07_0309 -
           42655890-42656001,42656241-42656332,42656493-42656500,
           42658146-42658209,42658408-42658473,42658479-42658571
          Length = 144

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 172 NFRQCFFRCHFCKKLVWNSLNNVDDKQEKMVQAVL 68
           NF Q FF C  CK +V++ L+  D K      +VL
Sbjct: 27  NFLQMFFLCKLCKFVVFSILSQPDSKLNPGKSSVL 61


>01_06_1740 - 39575614-39576981
          Length = 455

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 568 QPSTGPLSSVEPRPYNFSLRSTSSKGSVSHPSDFKARLYIQMTIDTNCIFFWII 407
           +P   P S   P P + +   T +K  +  P + K R  +       CI FW++
Sbjct: 226 RPHNEPGSYASPSPSSEAPARTPAKSPMLRPRNDKKRRPVAFCFTACCILFWLL 279


>04_04_1261 - 32186769-32186909,32188493-32188612,32188742-32189065
          Length = 194

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = -1

Query: 484 SHPSDFKARLYIQMTIDTNCIFFWIITQYAY*NWRQLNVFAIYCLKANIP*LCSGSDFLQ 305
           ++ +D +AR +   +      F W+ T+Y   NW+ L +     L A +    S  D   
Sbjct: 74  NNATDHQARTHTHFSAKRASAFSWLFTKYFVANWQLLPLQPFLALAATVAAAASSID--- 130

Query: 304 FVLHPVNHTDAI 269
              H +N ++A+
Sbjct: 131 ---HTLNSSNAV 139


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 408 MIQKKIQFVSMVIWMYNLALKSDGWETEPFELVERNEK 521
           +++ K  FVS+ I + N AL  D  E  PF   +RN K
Sbjct: 813 LVKNKDAFVSLCI-LINSALAGDETEKAPFSFFDRNGK 849


>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 554 TCTWLAAHHQCL*GHWC*AACQFE 625
           TCTW+     C  GHWC  AC  E
Sbjct: 421 TCTWVGCD-VC--GHWCHVACALE 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,922,610
Number of Sequences: 37544
Number of extensions: 436828
Number of successful extensions: 960
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)