Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P01
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)                   33   0.30 
SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)             32   0.53 
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)               31   0.92 
SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_59218| Best HMM Match : M20_dimer (HMM E-Value=2)
          Length = 233

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
 Frame = +2

Query: 170 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDK--------------L 307
           IF +V  +++ Y + L +AVAI SVS   + R +  +MV+ + +K              L
Sbjct: 36  IFVFV-YSQELYIKRLADAVAIKSVSAWPETRGEITKMVNHVAEKIRCKIYKVYRVLMEL 94

Query: 308 KEVGATTELRDVGFQTI-DGKDVQXXXXXXXXXXNDPKKNTVCIY 439
           K++G   EL DVG +T+ DG  +           ++P K T   Y
Sbjct: 95  KKLGTEVELVDVGTETLPDGSTLPLPPVLLGILGSNPAKKTPVDY 139


>SB_53869| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
          Length = 403

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 408 MIQKKIQFVSMVIWMYNLALKSDGWETEPFELVERNEKLYGRGSTDDKG 554
           +I K+I  +S +I     ++K   WET  ++ V+R  +L   G TDD G
Sbjct: 345 VIDKRITLISQIIHGIR-SIKMHAWETPYYQAVQRLRRLDYIGRTDDGG 392


>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -1

Query: 559 TGPLSSVEPRPYNFSLRSTSSKGSVSHPSDFKARLYIQMTIDTNCIF 419
           TGPLSS+  +     L       +VSHPS    R Y QM  D+NC+F
Sbjct: 503 TGPLSSLSAK----ILYMREHVAAVSHPS----RSYYQMPSDSNCVF 541


>SB_32062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 80  YHFFLLIINIIQ*VPNKFLAKMATEKTLPEIFKYVDQNKDSYKQLLKEAVA 232
           Y +  LI   IQ  PNK L      + + ++F Y  QN+  ++  ++ +++
Sbjct: 42  YSYISLITMAIQQSPNKMLTLSEIYQFIMDLFPYYRQNQQRWQNSIRHSLS 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,200,779
Number of Sequences: 59808
Number of extensions: 505299
Number of successful extensions: 1193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)