Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_P01
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical pr... 99 5e-21
AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical ... 88 7e-18
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 30 1.9
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 28 7.6
Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical p... 28 7.6
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 28 7.6
>Z93386-5|CAB07646.1| 473|Caenorhabditis elegans Hypothetical
protein R11H6.1 protein.
Length = 473
Score = 98.7 bits (235), Expect = 5e-21
Identities = 46/100 (46%), Positives = 65/100 (65%)
Frame = +2
Query: 161 LPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELRD 340
L +F+ +D + D+ K+LL+EAVAI SVS D R + IRMVHWM++KL+ +G EL D
Sbjct: 5 LTNVFQQIDGDYDNLKELLREAVAIQSVSGDPSKRDETIRMVHWMKEKLETIGTICELAD 64
Query: 341 VGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQP 460
+G Q ++GK V+ +D K T+ +YGHLDVQP
Sbjct: 65 LGTQELEGKTVKLPPVLLGTLGSDKNKKTLLVYGHLDVQP 104
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/65 (66%), Positives = 51/65 (78%)
Frame = +3
Query: 462 ALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKSIFEC 641
A KSDGW+TEPFELVE++ KL+GRGS+DDKGPVL W H I A + G +LPVN+K E
Sbjct: 105 AAKSDGWDTEPFELVEKDGKLFGRGSSDDKGPVLCWFHAIRAAQKNGIDLPVNIKFCLEG 164
Query: 642 MEESG 656
MEESG
Sbjct: 165 MEESG 169
>AC024859-4|AAK29983.4| 472|Caenorhabditis elegans Hypothetical
protein Y71H2AM.11 protein.
Length = 472
Score = 88.2 bits (209), Expect = 7e-18
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Frame = +2
Query: 170 IFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELRDVGF 349
+FK +D+ +D + LL+E+VAI SVS D R DC+RM W +D+LK +G T L ++G
Sbjct: 7 VFKSIDERQDEFIDLLRESVAIQSVSADPARRGDCVRMSEWARDQLKTLGVETSLWELGQ 66
Query: 350 QTI-DGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQP 460
QT+ G+ + D K T+ IYGHLDVQP
Sbjct: 67 QTLPSGEQLPLPPAVFGVYGRDKSKKTLLIYGHLDVQP 104
Score = 88.2 bits (209), Expect = 7e-18
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +3
Query: 462 ALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKSIFEC 641
A K DGW T PFEL E + KL+GRGSTDDKGPV+ W+ + + G +LP+N+K + EC
Sbjct: 105 AEKEDGWNTNPFELTEIDGKLFGRGSTDDKGPVIAWIAVLKVLQTLGIDLPINIKFVLEC 164
Query: 642 MEES 653
MEES
Sbjct: 165 MEES 168
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +2
Query: 53 KICRQQNSLYHFFLLIINIIQ*VPNKFLAKMATEKTLPEIFKYV-DQNKDSYKQLLKEA- 226
+I RQQN L+ F L ++ P +F ++ ++ LP++FK V + K S + + +
Sbjct: 643 RIARQQNPLHSFDWLNVS-----PRRFRPELCIKEDLPKLFKLVRNSTKISLESPTQTSE 697
Query: 227 ---VAIPSVSCD 253
+P +SCD
Sbjct: 698 TTETPLPDLSCD 709
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 363 PSIV*KPTSLNSVVAPTSFNLSCIQ*TIRMQSARY 259
PS++ ++ SV+A S+NL + IR +A+Y
Sbjct: 150 PSVIRDSVAMASVIAQCSYNLQTLDLKIRSDNAKY 184
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 363 PSIV*KPTSLNSVVAPTSFNLSCIQ*TIRMQSARY 259
PS++ ++ SV+A S+NL + IR +A+Y
Sbjct: 150 PSVIRDSVAMASVIAQCSYNLQTLDLKIRSDNAKY 184
>Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical
protein B0564.6b protein.
Length = 423
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 363 PSIV*KPTSLNSVVAPTSFNLSCIQ*TIRMQSARY 259
PS++ ++ SV+A S+NL + IR +A+Y
Sbjct: 48 PSVIRDSVAMASVIAQCSYNLQTLDLKIRSDNAKY 82
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 363 PSIV*KPTSLNSVVAPTSFNLSCIQ*TIRMQSARY 259
PS++ ++ SV+A S+NL + IR +A+Y
Sbjct: 150 PSVIRDSVAMASVIAQCSYNLQTLDLKIRSDNAKY 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,303,688
Number of Sequences: 27780
Number of extensions: 398742
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -