Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_P01
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein si...    34   0.14 
At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR...    29   5.4  
At2g17530.1 68415.m02028 protein kinase family protein identical...    28   9.4  

>At4g17830.1 68417.m02659 peptidase M20/M25/M40 family protein
           similar to acetylornithine deacetylase
           (Acetylornithinase, AO; N-acetylornithinase, NAO)
           [Dictyostelium discoideum] SWISS-PROT:P54638
          Length = 440

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +3

Query: 417 KKIQFVSMVIWMYNLALKSDGWETEPFELVERNEKLYGRGSTDDKGPV 560
           K + FV M   M  +    D WE +PF L    +KL GRG+TD  G V
Sbjct: 93  KILSFVGM--HMDVVTANPDDWEFDPFSLSIDGDKLRGRGTTDCLGHV 138


>At5g45200.1 68418.m05548 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1261

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 133 KLVWNSLNNVDDK--QEKMVQAVLLPANFINQILRIPYSEV 17
           KL+   L + D+   +EK+      P+N I  +LRIPY E+
Sbjct: 418 KLLARELRSKDESYWKEKLSALANSPSNTIQDVLRIPYDEL 458


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 337 GCWLSNNRWQRRSTAASFSRRIG**SKKKYSLYLWSFGCTTW 462
           GCW  N   +   T    +  +   S   YS+ +WSF CT +
Sbjct: 263 GCWADNKFAEEIQTRQYRAPEVILQSGYSYSVDMWSFACTAF 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,330
Number of Sequences: 28952
Number of extensions: 364541
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)