Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O24
         (973 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   2.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.7  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   4.7  
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    23   4.7  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    23   4.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   6.3  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   8.3  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/40 (25%), Positives = 13/40 (32%)
 Frame = +2

Query: 761 PAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPPXPPXXXXP 880
           P    +  P+ + P         P  PPT  P P     P
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 892 PXXPPXPXPPP 924
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 892 PXXPPXPXPPPXPP 933
           P  PP P PP  PP
Sbjct: 178 PQVPPLPLPPIFPP 191


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 380 DRFDLSWRYGCR 345
           D FDL W Y C+
Sbjct: 136 DGFDLDWEYPCQ 147


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 380 DRFDLSWRYGCR 345
           D FDL W Y C+
Sbjct: 137 DGFDLDWEYPCQ 148


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 380 DRFDLSWRYGCR 345
           D FDL W Y C+
Sbjct: 137 DGFDLDWEYPCQ 148


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 800 PXFXXPXXTPPXXPPTSPPXPP 865
           P F  P   P      SPP PP
Sbjct: 54  PAFFHPGLLPLAWQANSPPSPP 75


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 815 PXXTPPXXPPTSPP 856
           P  TPP  P  SPP
Sbjct: 17  PLLTPPHNPAYSPP 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,373
Number of Sequences: 336
Number of extensions: 3384
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27513178
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)