Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_O24
(973 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.046
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 33 0.046
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 32 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.14
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.19
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.25
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.25
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.43
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.75
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 29 0.75
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.75
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 1.7
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 26 9.2
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 26 9.2
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.046
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 901 PPXPXPPPXPPAXXPXXXPXPPP 969
P P PPP PP P P PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +1
Query: 892 PXXPPXPXPPP--XPPAXXPXXXPXPPP 969
P PP P PPP PP+ P P PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPP---PPPPP 30
Score = 29.1 bits (62), Expect = 0.99
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 782 PPRTAPPXFXXPXXTPPXXPPTSPPXPP 865
PP PP P PP PP PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP--PPPPP 30
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 816 PXXHPRXXLPPPPXXPQXXPPXPXPP 893
P +P PPP P PP P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.046
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Frame = +2
Query: 758 SPAPXHLSPPRTAPPXFXXPXXTPPXXP------PTSPP 856
SP+P HLS P T PP P TP P PT PP
Sbjct: 360 SPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERDPTIPP 398
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 968 GGGXGXXXGXXAGGXGGGXGXGGXXGXXXXGXXGLGXXGG 849
GGG G G G GG G GG G G G G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = -3
Query: 965 GGXGXXXGXXAGGXGGGXGXGGXXGXXXX--GXXGLGXXGGRWEGXAG 828
GG G G G GG G GG G G G G G +EG G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.14
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +1
Query: 868 PXXPXXXXPXXPPXPXPPPXPPAXXPXXXPXPPP 969
P P PP P PPP P P PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +3
Query: 801 PXSXXPXXHPRXXLPPPPXXPQXXPPXPXPPXXXXXXXXXXXXXRXXPPPXPXPPP 968
P P P PPP PP P PP PPP P PPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG---------AGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 868 PXXPXXXXPXXPPXPXPPPXPPAXXPXXXPXPPP 969
P P P P P P P PPA P PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPP 766
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 892 PXXPPXPXPPPXPPAXXPXXXPXPP 966
P P P PPP P P P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +1
Query: 868 PXXPXXXXPXXPPXPXPPPXPPAXXPXXXPXPPP 969
P P P P P P PP P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +2
Query: 761 PAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPPXPP 865
P P + P AP P P P PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +2
Query: 731 PFRXPXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPP 856
P P PAP PP PP PP PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP--PPPPPP 783
Score = 25.8 bits (54), Expect = 9.2
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +2
Query: 758 SPAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPPXPPXXXXP 880
+PAP + P AP P PP + P PP P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.5 bits (68), Expect = 0.19
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 719 TTXXPFRXPXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPPXPP 865
T+ P P S AP L P +APP P PP++P PP
Sbjct: 412 TSTPPVPTPPSLPPSAPPSLPP--SAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 31.1 bits (67), Expect = 0.25
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 901 PPXPXPPPXPPAXXPXXXPXPPP 969
PP P PP PP+ P P PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPP 437
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 788 RTAPPXFXXPXXTPPXXPPTSPPXPP 865
RT+ P P PP PP+ PP P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAP 436
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Frame = +2
Query: 761 PAPXHLSPPRTAP--PXFXX-------PXXTPPXXPPTSPPXPPXXXXP 880
PAP P R+AP P P TPP PP++PP P P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPP 437
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +2
Query: 743 PXSXXSPAPXHLSPPRTAP--PXFXXPXXTPPXXPPTSPPXP 862
P S S P P +AP P P PP SPP P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Frame = +2
Query: 743 PXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXP--PTSPPXPPXXXXPXXXXP 895
P S AP +S P PP P PP P P PP P P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVP--PPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 761 PAPXHLSPPRTAPPX-FXXPXXTPPXXPPTSPPXPP 865
P P + PP +APP P PP P +S P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 877 PXXXXPXXPPXPXPPPXPPAXXPXXXPXPPP 969
P P PP P P PP+ P P PP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPP--MPAGPP 1728
Score = 25.8 bits (54), Expect = 9.2
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +1
Query: 892 PXXPPXPXPPPXPPAXXPXXXPXPPP 969
P PP PPP P P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.25
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 743 PXSXXSPAPX-HLSPPRTAPPXFXXPXXTPPXXPPTSPPXPP 865
P + P P L PP +APP P +P PP PP
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
Score = 27.1 bits (57), Expect = 4.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 910 PXPPPXPPAXXPXXXPXPPP 969
P PPP PPA P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +2
Query: 749 SXXSPAPXHLSPP-RTAPPXFXXPXXTPPXXPPTSPPXPPXXXXP 880
S P P L PP + A P P + P P PP PP P
Sbjct: 162 SKAPPIPSSLPPPAQPAAPVKSPP--SAPSLPSAVPPMPPKVPPP 204
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.25
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +2
Query: 731 PFRXPXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXPP-TSPPXP-PXXXXPXXXXP 895
P P + P P PP APP PP PP T+PP P P P P
Sbjct: 1180 PVPKPAAGVPPVP----PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Frame = +2
Query: 731 PFRXPXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXPPT--SPPXP-PXXXXPXXXXP 895
P P P P PP TAPP PP PT +PP P P P P
Sbjct: 1199 PVPKPSVGVPPVP----PPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Frame = +2
Query: 719 TTXXPFRXPXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXPPTS--PPXPPXXXXPXXXX 892
+T P P S P P S +APP P P P S PP P P
Sbjct: 1038 STAPPVPIPTSTP-PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK 1096
Query: 893 P 895
P
Sbjct: 1097 P 1097
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 801 PXSXXPXXHPRXXLPPPPXXPQXXPPXPXP 890
P + P P LPP P PP P P
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 9.2
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 758 SPAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPPXPP 865
S AP P APP P PP PTS P P
Sbjct: 1019 SKAPPVPLPSADAPP-IPVPSTAPPVPIPTSTPPVP 1053
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.43
Identities = 19/47 (40%), Positives = 19/47 (40%)
Frame = -3
Query: 968 GGGXGXXXGXXAGGXGGGXGXGGXXGXXXXGXXGLGXXGGRWEGXAG 828
GG G G GG GGG GG G G G G GG G G
Sbjct: 148 GGSRGGFGGNSRGGFGGG-SRGGFGGGSRGGSRG-GFRGGSRGGFRG 192
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.75
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 743 PXSXXSPAPXHLSPPRTAPPXFXXPXXTPPXXPPTSPP 856
P S SP P PP A P P P PP PP
Sbjct: 161 PNSMVSPPPS-FQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 29.5 bits (63), Expect = 0.75
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 397 PVPSKPVHPTLPPXQIKPV--PVYPTPAXRXHHHS 495
PVP KP P+ P ++ PV P+ PTP R H S
Sbjct: 154 PVPKKPSKPSKPRKKV-PVSHPLPPTPPSREEHVS 187
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.5 bits (63), Expect = 0.75
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 968 GGGXGXXXGXXAGGXGGGXGXGGXXGXXXXGXXGLGXXGGRWEGXAGV 825
GG G G GG GG G G G G G G +G A V
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAKV 73
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = -3
Query: 965 GGXGXXXGXXAGGXGG--GXGXGGXXGXXXXGXXGLGXXGGRWEGXAG 828
GG G GG GG G G GG G G GG G G
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 99 DLEKKAVTALVFRQHL---RECLVNMKIIGIVLLLAFAGIECRK 221
DLEK AL+ L + CL KI + L F G ECRK
Sbjct: 553 DLEKNITEALLTGDVLSAVKACLEEKKISEALFLSTFGGKECRK 596
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +2
Query: 743 PXSXXSPAPXHLSPPRT--APPXFXXPXXTPPXXPPTSPP 856
P +P L PPR+ + P TP PPT PP
Sbjct: 1009 PDHLVAPRVKPLLPPRSGSSSSGVPAPNLTPVNVPPTPPP 1048
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 228 KPIDKNANIDFINMEAGGARP 290
K + KN+ I F++ E GG +P
Sbjct: 182 KSVKKNSEIKFVSEERGGTKP 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,221
Number of Sequences: 5004
Number of extensions: 47235
Number of successful extensions: 386
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 499296500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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