Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_O23
         (1003 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    29   0.057
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    25   1.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   2.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   6.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 0.057
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = +3

Query: 837 SXXXPXPPXPPPPXXPPPXPPXXPXPPXXXPPXXPPPPXXP 959
           S   P P  PP        PP    PP   PP  PP    P
Sbjct: 156 SIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 867 PPPXXPPPXPPXXPXPPXXXPPXXPPPPXXPPPXXPP 977
           P P  PP        PP    P  P PP  PP    P
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
 Frame = +3

Query: 855 PPXPPPPXXPPPXPPXXPXP--PXXXPPXXPPPPXXPPPXXPPXXXPP 992
           P   P P    P P   P        PP    PP   PP  PP    P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = +1

Query: 847 SPXPPXPPPPXXPPPXPPXXPPXPXXPXXXXPPPPXXPXPPXPPXXXP 990
           +P  P   PP    P P    P         P  P  P PP      P
Sbjct: 64  APIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 452  CFFXXVIEXFYSIXWXTLLHSIYLGLC 372
            CFF   I     I W  LL+ +YL LC
Sbjct: 1115 CFFPSKIR----ICWNVLLNCVYLFLC 1137


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 849 PXPPXPPPPXXPPPXPPXXPXPP 917
           P  P P PP  PP   P     P
Sbjct: 23  PHSPEPYPPRCPPIYEPSCQYSP 45


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 855 PPXPPPPXXPPPXPPXXP 908
           P    PP  P P PP  P
Sbjct: 110 PSGNVPPLTPSPGPPSHP 127



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 856 PPXPPPPXXPPPXPPXXP 909
           P    PP  P P PP  P
Sbjct: 110 PSGNVPPLTPSPGPPSHP 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,834
Number of Sequences: 336
Number of extensions: 5392
Number of successful extensions: 24
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28547508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)